############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SVP ### ############################################################################## ############################################################################## * checking for file ‘SVP/DESCRIPTION’ ... OK * preparing ‘SVP’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SVP.Rmd’ using rmarkdown 0% 10 20 30 40 50 60 70 80 90 100% |----|----|----|----|----|----|----|----|----|----| *************************************************** 0% 10 20 30 40 50 60 70 80 90 100% |----|----|----|----|----|----|----|----|----|----| *************************************************** 0% 10 20 30 40 50 60 70 80 90 100% |----|----|----|----|----|----|----|----|----|----| *************************************************** 0% 10 20 30 40 50 60 70 80 90 100% |----|----|----|----|----|----|----|----|----|----| *************************************************** 0% 10 20 30 40 50 60 70 80 90 100% |----|----|----|----|----|----|----|----|----|----| *************************************************** 0% 10 20 30 40 50 60 70 80 90 100% |----|----|----|----|----|----|----|----|----|----| *************************************************** 0% 10 20 30 40 50 60 70 80 90 100% |----|----|----|----|----|----|----|----|----|----| *************************************************** 0% 10 20 30 40 50 60 70 80 90 100% |----|----|----|----|----|----|----|----|----|----| *************************************************** Quitting from SVP.Rmd:430-439 [fig_gbv] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `adjust_hclust_tip.edge.len()`: ! could not find function "adjust_hclust_tip.edge.len" --- Backtrace: ▆ 1. └─SVP::plot_heatmap_globalbv(gbv.res, moran.t = moran.res, lisa.t = lisa.f1.res) 2. └─ggtree::ggtree(...) 3. ├─base::suppressWarnings(...) 4. │ └─base::withCallingHandlers(...) 5. ├─ggplot2::ggplot(...) 6. └─ggplot2:::ggplot.default(...) 7. ├─ggplot2::fortify(data, ...) 8. └─ggtree:::fortify.hclust(data, ...) 9. └─ggtree:::fortify.phylo(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'SVP.Rmd' failed with diagnostics: could not find function "adjust_hclust_tip.edge.len" --- failed re-building ‘SVP.Rmd’ SUMMARY: processing the following file failed: ‘SVP.Rmd’ Error: Vignette re-building failed. Execution halted