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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 RiboProfiling
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* checking for file ‘RiboProfiling/DESCRIPTION’ ... OK
* preparing ‘RiboProfiling’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RiboProfiling.Rnw’ using knitr

Quitting from RiboProfiling.Rnw:319-349 [CountReads]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! subscript contains invalid names
---
Backtrace:
     x
  1. +-RiboProfiling::countShiftReads(...)
  2. +-exonGRanges[names(cdsPosTransc)]
  3. \-exonGRanges[names(cdsPosTransc)]
  4.   +-methods::callNextMethod(x = x, i = i)
  5.   | \-base::eval(call, callEnv)
  6.   |   \-base::eval(call, callEnv)
  7.   \-S4Vectors (local) .nextMethod(x = x, i = i)
  8.     \-S4Vectors:::subset_along_ROWS(x, i, drop = drop)
  9.       +-S4Vectors::extractROWS(x, i)
 10.       \-GenomicRanges (local) extractROWS(x, i)
 11.         \-IRanges (local) METHOD(x, i)
 12.           \-S4Vectors::normalizeSingleBracketSubscript(i, x, as.NSBS = TRUE)
 13.             +-S4Vectors::NSBS(...)
 14.             \-S4Vectors::NSBS(...)
 15.               \-S4Vectors:::.subscript_error("subscript contains invalid ", what)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RiboProfiling.Rnw' failed with diagnostics:
subscript contains invalid names
--- failed re-building ‘RiboProfiling.Rnw’

SUMMARY: processing the following file failed:
  ‘RiboProfiling.Rnw’

Error: Vignette re-building failed.
Execution halted