############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Rgraphviz.buildbin-libdir && mkdir Rgraphviz.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=Rgraphviz.buildbin-libdir Rgraphviz_2.51.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'Rgraphviz' ... ** using staged installation configure.win: loading site script /usr/local/etc/config.site configure.win: Using bundled Graphviz. configure.win: Searching for the compilers specified by R. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++17 accepts -g... yes configure.win: Preparing to compile Graphviz. configure.win: Configuring bundled Graphviz. checking build system type... x86_64-w64-mingw32 checking host system type... x86_64-w64-mingw32 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for x86_64-w64-mingw32-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for library containing strerror... none required checking for flex... no checking for lex... no checking for bison... no checking for byacc... no checking for gawk... (cached) gawk checking whether ln -s works... no, using cp -pR checking for sed... sed checking for grep... grep checking for sort... sort checking for groff... groff checking for ps2pdf... ps2pdf checking for pstopdf... (cached) ps2pdf checking for x86_64-w64-mingw32-pkg-config... no checking for pkg-config... /x86_64-w64-mingw32.static.posix/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for tclsh8.6... no checking for tclsh8.5... no checking for tclsh8.4... no checking for tclsh8.3... no checking for tclsh... no checking whether gcc and cc understand -c and -o together... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++17 accepts -g... yes checking dependency style of g++ -std=gnu++17... gcc3 checking for x86_64-w64-mingw32-gcc... x86_64-w64-mingw32-gcc checking whether we are using the GNU Objective C compiler... yes checking whether x86_64-w64-mingw32-gcc accepts -g... yes checking dependency style of x86_64-w64-mingw32-gcc... gcc3 checking for inline... inline checking for windres... windres checking for an ANSI C-conforming const... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... grep checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for mode_t... yes checking for pid_t... yes checking for size_t... yes checking for ssize_t... yes checking for uid_t in sys/types.h... no checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stddef.h... (cached) yes checking for stdlib.h... (cached) yes checking for stdint.h... 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(cached) yes checking fenv.h usability... yes checking fenv.h presence... yes checking for fenv.h... yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking setjmp.h usability... yes checking setjmp.h presence... yes checking for setjmp.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... no checking sys/times.h presence... no checking for sys/times.h... no checking for sys/types.h... 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(cached) yes checking for strstr... yes checking for _NSGetEnviron... no checking for strcasecmp... yes checking for strncasecmp... yes checking for strcasestr... no checking for a sed that does not truncate output... sed checking for fgrep... grep -F checking for ld used by gcc... /x86_64-w64-mingw32.static.posix/bin/ld checking if the linker (/x86_64-w64-mingw32.static.posix/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /c/Strawberry/c/bin/nm -B checking the name lister (/c/Strawberry/c/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 8192 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /x86_64-w64-mingw32.static.posix/bin/ld option to reload object files... -r checking for x86_64-w64-mingw32-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for x86_64-w64-mingw32-ar... no checking for ar... ar checking for x86_64-w64-mingw32-strip... no checking for strip... strip checking for x86_64-w64-mingw32-ranlib... no checking for ranlib... ranlib checking command to parse /c/Strawberry/c/bin/nm -B output from gcc object... ok checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ -std=gnu++17 accepts -g... (cached) yes checking dependency style of g++ -std=gnu++17... (cached) gcc3 checking how to run the C++ preprocessor... g++ -std=gnu++17 -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/x86_64-w64-mingw32.static.posix/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for ld used by g++ -std=gnu++17... /x86_64-w64-mingw32.static.posix/bin/ld checking if the linker (/x86_64-w64-mingw32.static.posix/bin/ld) is GNU ld... yes checking whether the g++ -std=gnu++17 linker (/x86_64-w64-mingw32.static.posix/bin/ld) supports shared libraries... yes checking for g++ -std=gnu++17 option to produce PIC... -DDLL_EXPORT -DPIC checking if g++ -std=gnu++17 PIC flag -DDLL_EXPORT -DPIC works... yes checking if g++ -std=gnu++17 static flag -static works... yes checking if g++ -std=gnu++17 supports -c -o file.o... yes checking if g++ -std=gnu++17 supports -c -o file.o... (cached) yes checking whether the g++ -std=gnu++17 linker (/x86_64-w64-mingw32.static.posix/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking which extension is used for runtime loadable modules... .dll checking which variable specifies run-time module search path... PATH checking for the default library search path... /lib /usr/lib checking for library containing dlopen... -ldl checking for dlerror... yes checking for shl_load... no checking for shl_load in -ldld... no checking whether cygwin_conv_path is declared... no checking for dld_link in -ldld... no checking for _ prefix in compiled symbols... no checking whether deplibs are loaded by dlopen... unknown checking for argz.h... no checking for error_t... no checking for argz_add... no checking for argz_append... no checking for argz_count... no checking for argz_create_sep... no checking for argz_insert... no checking for argz_next... no checking for argz_stringify... no checking whether libtool supports -dlopen/-dlpreopen... yes checking for ltdl.h... yes checking whether lt_dlinterface_register is declared... yes checking for lt_dladvise_preload in -lltdl... yes checking where to find libltdl headers... checking where to find libltdl library... -lltdl checking for unistd.h... (cached) yes checking for dl.h... no checking for sys/dl.h... no checking for dld.h... no checking for mach-o/dyld.h... no checking for dirent.h... yes checking for closedir... yes checking for opendir... yes checking for readdir... yes checking for strlcat... no checking for strlcpy... no checking for X... disabled configure: WARNING: X11 not available. checking tcl.h usability... no checking tcl.h presence... no checking for tcl.h... no configure: WARNING: Unable to find header tcl.h. The Tcl packages will not be built configure: WARNING: No Tcl. The Tk packages will not be built either checking for connect... no checking for main in -lsocket... no checking for accept... no checking for gethostbyname... no checking for main in -lnsl... no checking for main in -lXpm... no configure: WARNING: Optional Xpm library not available checking X11/Intrinsic.h usability... no checking X11/Intrinsic.h presence... no checking for X11/Intrinsic.h... no checking for X11/Xaw/Text.h... no configure: WARNING: Optional Xaw library not available - missing headers checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for main in -lz... yes checking for deflateBound... no checking for GDK_PIXBUF... yes checking for GTK... yes checking for GTKGL... no checking for GTKGLEXT... no checking for GLADE... no checking for qmake-qt4... no checking for qmake-qt3... no checking for qmake... no checking for sincos... yes checking if FILE struct contains _cnt... no checking if FILE struct contains _r... no checking if FILE struct contains _next... no checking if FILE struct contains _IO_read_end... no checking if errno externs are declared... no checking if getopt externs are declared... yes checking if intptr_t is declared... yes checking if assert needs __eprintf... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/cdt/Makefile config.status: creating lib/cdt/libcdt.pc config.status: creating lib/graph/Makefile config.status: creating lib/graph/libgraph.pc config.status: creating lib/rbtree/Makefile config.status: creating lib/pathplan/Makefile config.status: creating lib/pathplan/libpathplan.pc config.status: creating lib/dotgen/Makefile config.status: creating lib/neatogen/Makefile config.status: creating lib/fdpgen/Makefile config.status: creating lib/sparse/Makefile config.status: creating lib/sfdpgen/Makefile config.status: creating lib/osage/Makefile config.status: creating lib/circogen/Makefile config.status: creating lib/twopigen/Makefile config.status: creating lib/patchwork/Makefile config.status: creating lib/pack/Makefile config.status: creating lib/ortho/Makefile config.status: creating lib/common/Makefile config.status: creating lib/vpsc/Makefile config.status: creating lib/gvc/Makefile config.status: creating lib/gvc/libgvc.pc config.status: creating lib/xdot/Makefile config.status: creating lib/xdot/libxdot.pc config.status: creating plugin/Makefile config.status: creating plugin/core/Makefile config.status: creating plugin/dot_layout/Makefile config.status: creating plugin/neato_layout/Makefile config.status: creating graphviz.spec config.status: creating Doxyfile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands === configuring in libltdl (/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/libltdl) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt' '--host=x86_64-w64-mingw32' '--build=x86_64-w64-mingw32' 'CC=gcc' 'CXX=g++ -std=gnu++17' 'CFLAGS=-fcommon -O2 -Wall -mfpmath=sse -msse2 -mstackrealign' 'CXXFLAGS=-O2 -Wall -mfpmath=sse -msse2 -mstackrealign' 'LDFLAGS=' '--libdir=/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' '--includedir=/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include' '--with-cgraph=no' '--enable-swig=no' '--enable-static' '--disable-shared' '--with-pic' '--with-libgd=no' '--disable-ltdl' '--without-x' '--without-expat' '--without-devil' '--without-rsvg' '--without-ghostscript' '--without-visio' '--without-pangocairo' '--without-lasi' '--without-glitz' '--without-freetype2' '--without-fontconfig' '--without-rpat' '--without-glut' '--without-gts' '--without-png' '--without-tcl' '--without-jpeg' 'build_alias=x86_64-w64-mingw32' 'host_alias=x86_64-w64-mingw32' 'R_LIBS=E:/biocbuild/bbs-3.21-bioc/meat/Rgraphviz.buildbin-libdir/00LOCK-Rgraphviz/00new;E:/biocbuild/bbs-3.21-bioc/meat/Rgraphviz.buildbin-libdir' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking build system type... x86_64-w64-mingw32 checking host system type... x86_64-w64-mingw32 checking for style of include used by make... GNU checking for x86_64-w64-mingw32-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for a sed that does not truncate output... sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /x86_64-w64-mingw32.static.posix/bin/ld checking if the linker (/x86_64-w64-mingw32.static.posix/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /c/Strawberry/c/bin/nm -B checking the name lister (/c/Strawberry/c/bin/nm -B) interface... BSD nm checking whether ln -s works... no, using cp -pR checking the maximum length of command line arguments... 8192 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /x86_64-w64-mingw32.static.posix/bin/ld option to reload object files... -r checking for x86_64-w64-mingw32-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for x86_64-w64-mingw32-ar... no checking for ar... ar checking for x86_64-w64-mingw32-strip... no checking for strip... strip checking for x86_64-w64-mingw32-ranlib... no checking for ranlib... ranlib checking command to parse /c/Strawberry/c/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for x86_64-w64-mingw32-as... no checking for as... as checking for x86_64-w64-mingw32-dlltool... no checking for dlltool... dlltool checking for x86_64-w64-mingw32-objdump... objdump checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/x86_64-w64-mingw32.static.posix/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking which extension is used for runtime loadable modules... .dll checking which variable specifies run-time module search path... PATH checking for the default library search path... /lib /usr/lib checking for library containing dlopen... -ldl checking for dlerror... yes checking for shl_load... no checking for shl_load in -ldld... no checking whether cygwin_conv_path is declared... no checking for dld_link in -ldld... no checking for _ prefix in compiled symbols... no checking whether deplibs are loaded by dlopen... unknown checking for argz.h... no checking for error_t... no checking for argz_add... no checking for argz_append... no checking for argz_count... no checking for argz_create_sep... no checking for argz_insert... no checking for argz_next... no checking for argz_stringify... no checking whether libtool supports -dlopen/-dlpreopen... yes checking for unistd.h... (cached) yes checking for dl.h... no checking for sys/dl.h... no checking for dld.h... no checking for mach-o/dyld.h... no checking for dirent.h... yes checking for closedir... yes checking for opendir... yes checking for readdir... yes checking for strlcat... no checking for strlcpy... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands ---------------------------------------------------------------- graphviz-2.28.0 will be compiled with the following: options: cgraph: No (disabled by default - experimental) digcola: Yes expat: No (disabled) fontconfig: No (disabled) freetype: No (disabled) glut: No (disabled) gts: No (disabled) ipsepcola: No (disabled by default - C++ portability issues) ltdl: No (disabled) ortho: Yes png: No (disabled) jpeg: No (disabled) sfdp: Yes shared: No (disabled) static: Yes qt: No (qmake not found) commands: dot: Yes (always enabled) neato: Yes (always enabled) fdp: Yes (always enabled) circo: Yes (always enabled) twopi: Yes (always enabled) gvpr: Yes (always enabled) gvmap: Yes (always enabled) lefty: No (missing Xaw headers) smyrna: No (disabled by default - experimental) gvedit: No (qmake not found) plugin libraries: dot_layout: Yes (always enabled) neato_layout: Yes (always enabled) core: Yes (always enabled) devil: No (disabled) gd: No (disabled) gdiplus: No (disabled by default - Windows only) gdk_pixbuf: Yes ghostscript: No (disabled) glitz: No (disabled by default - incomplete) gtk: Yes lasi: No (disabled) ming: No (disabled by default - incomplete) pangocairo: No (disabled) quartz: No (disabled by default - Mac only) rsvg: No (disabled) visio: No (disabled by default - experimental) xlib: No (disabled or unavailable) language extensions: gv_sharp: No (swig not available) gv_go: No (disabled by default - experimental) gv_guile: No (swig not available) gv_io: No (disabled by default - no swig support yet) gv_java: No (swig not available) gv_lua: No (swig not available) gv_ocaml: No (swig not available) gv_perl: No (swig not available) gv_php: No (swig not available) gv_python: No (swig not available) gv_python23: No (disabled by default - for multiversion installs) gv_python24: No (disabled by default - for multiversion installs) gv_python25: No (disabled by default - for multiversion installs) gv_python26: No (disabled by default - for multiversion installs) gv_python27: No (disabled by default - for multiversion installs) gv_R: No (swig not available) gv_ruby: No (swig not available) gv_tcl: No (tcl not available) tcldot: No (tcl not available) tclpathplan: No (tcl not available) gdtclft: No (tcl not available) tkspline: No (tk not available) make install-recursive make[1]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz' Making install in libltdl make[2]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/libltdl' make install-am make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/libltdl' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/libltdl' make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/libltdl' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/libltdl' make[2]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/libltdl' Making install in lib make[2]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib' Making install in cdt make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/cdt' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/cdt' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libcdt.la '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' libtool: install: /usr/bin/install -c .libs/libcdt.lai /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libcdt.la libtool: install: /usr/bin/install -c .libs/libcdt.a /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libcdt.a libtool: install: chmod 644 /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libcdt.a libtool: install: ranlib /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libcdt.a libtool: install: warning: remember to run `libtool --finish /e/biocbuild/bbs-3.21-bioc/meat/Rgraphviz/src/libwinucrt/lib' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/install -c -m 644 cdt.3 '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 cdt.3.pdf '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/pkgconfig' /usr/bin/install -c -m 644 libcdt.pc '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/pkgconfig' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' /usr/bin/install -c -m 644 cdt.h '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/cdt' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/cdt' Making install in graph make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/graph' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/graph' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libgraph.la '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' libtool: install: /usr/bin/install -c .libs/libgraph.lai /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgraph.la libtool: install: /usr/bin/install -c .libs/libgraph.a /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgraph.a libtool: install: chmod 644 /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgraph.a libtool: install: ranlib /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgraph.a libtool: install: warning: remember to run `libtool --finish /e/biocbuild/bbs-3.21-bioc/meat/Rgraphviz/src/libwinucrt/lib' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/install -c -m 644 graph.3 '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 graph.3.pdf '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/pkgconfig' /usr/bin/install -c -m 644 libgraph.pc '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/pkgconfig' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' /usr/bin/install -c -m 644 graph.h '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/graph' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/graph' Making install in pathplan make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/pathplan' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/pathplan' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libpathplan.la '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' libtool: install: /usr/bin/install -c .libs/libpathplan.lai /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libpathplan.la libtool: install: /usr/bin/install -c .libs/libpathplan.a /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libpathplan.a libtool: install: chmod 644 /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libpathplan.a libtool: install: ranlib /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libpathplan.a libtool: install: warning: remember to run `libtool --finish /e/biocbuild/bbs-3.21-bioc/meat/Rgraphviz/src/libwinucrt/lib' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/install -c -m 644 pathplan.3 '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 pathplan.3.pdf '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/pkgconfig' /usr/bin/install -c -m 644 libpathplan.pc '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/pkgconfig' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' /usr/bin/install -c -m 644 pathgeom.h pathplan.h '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/pathplan' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/pathplan' Making install in vpsc make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/vpsc' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/vpsc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/vpsc' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/vpsc' Making install in rbtree make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/rbtree' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/rbtree' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/rbtree' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/rbtree' Making install in ortho make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/ortho' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/ortho' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/ortho' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/ortho' Making install in sparse make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/sparse' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/sparse' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/sparse' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/sparse' Making install in patchwork make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/patchwork' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/patchwork' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/patchwork' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/patchwork' Making install in common make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/common' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/common' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' /usr/bin/install -c -m 644 arith.h geom.h color.h types.h textpara.h usershape.h '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/common' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/common' Making install in pack make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/pack' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/pack' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/install -c -m 644 pack.3 '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 pack.3.pdf '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' /usr/bin/install -c -m 644 pack.h '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/pack' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/pack' Making install in xdot make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/xdot' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/xdot' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libxdot.la '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' libtool: install: /usr/bin/install -c .libs/libxdot.lai /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libxdot.la libtool: install: /usr/bin/install -c .libs/libxdot.a /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libxdot.a libtool: install: chmod 644 /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libxdot.a libtool: install: ranlib /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libxdot.a libtool: install: warning: remember to run `libtool --finish /e/biocbuild/bbs-3.21-bioc/meat/Rgraphviz/src/libwinucrt/lib' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/install -c -m 644 xdot.3 '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 xdot.3.pdf '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/pkgconfig' /usr/bin/install -c -m 644 libxdot.pc '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/pkgconfig' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' /usr/bin/install -c -m 644 xdot.h '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/xdot' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/xdot' Making install in gvc make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/gvc' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/gvc' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libgvc.la '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' libtool: install: /usr/bin/install -c .libs/libgvc.lai /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvc.la libtool: install: /usr/bin/install -c .libs/libgvc.a /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvc.a libtool: install: chmod 644 /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvc.a libtool: install: ranlib /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvc.a libtool: install: warning: remember to run `libtool --finish /e/biocbuild/bbs-3.21-bioc/tmpdir/RtmpIZnYpX/Rbuildd0701f6735d/Rgraphviz/src/libwinucrt/lib' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/install -c -m 644 gvc.3 '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man3' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 gvc.3.pdf '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc/pdf' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/pkgconfig' /usr/bin/install -c -m 644 libgvc.pc '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/pkgconfig' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' /usr/bin/install -c -m 644 gvc.h gvcext.h gvplugin.h gvcjob.h gvcommon.h gvplugin_render.h gvplugin_layout.h gvconfig.h gvplugin_textlayout.h gvplugin_device.h gvplugin_loadimage.h '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/gvc' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/gvc' Making install in circogen make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/circogen' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/circogen' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/circogen' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/circogen' Making install in dotgen make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/dotgen' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/dotgen' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/dotgen' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/dotgen' Making install in fdpgen make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/fdpgen' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/fdpgen' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/fdpgen' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/fdpgen' Making install in neatogen make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/neatogen' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/neatogen' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/neatogen' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/neatogen' Making install in twopigen make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/twopigen' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/twopigen' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/twopigen' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/twopigen' Making install in sfdpgen make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/sfdpgen' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/sfdpgen' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/sfdpgen' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/sfdpgen' Making install in osage make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/osage' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/osage' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/osage' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib/osage' make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib' make[2]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/lib' Making install in plugin make[2]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin' Making install in core make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/core' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/core' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libgvplugin_core.la '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' libtool: install: /usr/bin/install -c .libs/libgvplugin_core.lai /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_core.la libtool: install: /usr/bin/install -c .libs/libgvplugin_core.a /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_core.a libtool: install: chmod 644 /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_core.a libtool: install: ranlib /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_core.a libtool: install: warning: remember to run `libtool --finish /e/biocbuild/bbs-3.21-bioc/tmpdir/RtmpIZnYpX/Rbuildd0701f6735d/Rgraphviz/src/libwinucrt/lib' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/core' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/core' Making install in dot_layout make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/dot_layout' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/dot_layout' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libgvplugin_dot_layout.la '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.lai /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_dot_layout.la libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.a /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_dot_layout.a libtool: install: chmod 644 /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_dot_layout.a libtool: install: ranlib /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_dot_layout.a libtool: install: warning: remember to run `libtool --finish /e/biocbuild/bbs-3.21-bioc/tmpdir/RtmpIZnYpX/Rbuildd0701f6735d/Rgraphviz/src/libwinucrt/lib' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/dot_layout' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/dot_layout' Making install in neato_layout make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/neato_layout' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/neato_layout' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libgvplugin_neato_layout.la '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib' libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.lai /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_neato_layout.la libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.a /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_neato_layout.a libtool: install: chmod 644 /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_neato_layout.a libtool: install: ranlib /e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/libgvplugin_neato_layout.a libtool: install: warning: remember to run `libtool --finish /e/biocbuild/bbs-3.21-bioc/tmpdir/RtmpIZnYpX/Rbuildd0701f6735d/Rgraphviz/src/libwinucrt/lib' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/neato_layout' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin/neato_layout' make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin' make[4]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin' make[2]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz/plugin' make[2]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz' make[3]: Entering directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man7' /usr/bin/install -c -m 644 graphviz.7 '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/man/man7' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' /usr/bin/install -c -m 644 graphviz_version.h '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz' /usr/bin/mkdir -p '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc' /usr/bin/install -c -m 644 AUTHORS COPYING ChangeLog NEWS cpl1.0.txt '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/share/graphviz/doc' make[3]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz' make[2]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz' make[1]: Leaving directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/graphviz' cp: -r not specified; omitting directory '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/pkgconfig' cp: cannot stat '/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/lib/graphviz/*': No such file or directory checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for deflateBound in -lz... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for whether compiler has bool... yes configure.win: Using the following compilation and linking flags for Rgraphviz configure.win: PKG_CFLAGS= -I/e/biocbuild/bbs-3.21-bioc/tmpdir/Rtmp4qBoXe/R.INSTALL22be462f41b5f/Rgraphviz/src/libwinucrt/include/graphviz configure.win: PKG_LIBS=libxdot.a libgvplugin_dot_layout.a libgvplugin_neato_layout.a libgvplugin_core.a libgvc.a libpathplan.a libgraph.a libcdt.a -lz configure.win: GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 configure.win: Compiling using Graphviz version: '2.28.0'. configure.win: Using bundled Graphviz: 'TRUE'. configure.win: creating ./config.status config.status: creating R/graphviz_build_version.R config.status: creating src/Makevars ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c LL_funcs.c -o LL_funcs.o LL_funcs.c: In function 'Rgraphviz_agopenSimple': LL_funcs.c:430:29: warning: variable 'curNode' set but not used [-Wunused-but-set-variable] 430 | Agnode_t *head, *tail, *curNode; | ^~~~~~~ gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rgraphviz.c -o Rgraphviz.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RgraphvizInit.c -o RgraphvizInit.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c agopen.c -o agopen.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c agread.c -o agread.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c agwrite.c -o agwrite.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bezier.c -o bezier.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c buildEdgeList.c -o buildEdgeList.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c buildNodeList.c -o buildNodeList.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c doLayout.c -o doLayout.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c graphvizVersion.c -o graphvizVersion.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -Ilibwinucrt/include/graphviz -fcommon -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o gcc -shared -s -static-libgcc -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o libwinucrt/lib/libxdot.a libwinucrt/lib/libgvplugin_dot_layout.a libwinucrt/lib/libgvplugin_neato_layout.a libwinucrt/lib/libgvplugin_core.a libwinucrt/lib/libgvc.a libwinucrt/lib/libpathplan.a libwinucrt/lib/libgraph.a libwinucrt/lib/libcdt.a -lz -lm -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR installing to E:/biocbuild/bbs-3.21-bioc/meat/Rgraphviz.buildbin-libdir/00LOCK-Rgraphviz/00new/Rgraphviz/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'Rgraphviz' as Rgraphviz_2.51.0.zip * DONE (Rgraphviz)