############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL Repitools ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘Repitools’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -D R_NO_REMAP -I. -fpic -g -O2 -Wall -c const.c -o const.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -D R_NO_REMAP -I. -fpic -g -O2 -Wall -c hyp2f1.c -o hyp2f1.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -DR_NO_REMAP -c mmeansd.cpp -o mmeansd.o In file included from /home/biocbuild/bbs-3.21-bioc/R/include/Rdefines.h:41, from mmeansd.cpp:10: mmeansd.cpp: In function ‘SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)’: mmeansd.cpp:49:20: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’? 49 | PROTECT( res = allocVector( REALSXP, nval * 3) ); | ^~~~~~~~~~~ /home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’ 388 | #define PROTECT(s) Rf_protect(s) | ^ make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:202: mmeansd.o] Error 1 ERROR: compilation failed for package ‘Repitools’ * removing ‘/home/biocbuild/bbs-3.21-bioc/R/site-library/Repitools’ * restoring previous ‘/home/biocbuild/bbs-3.21-bioc/R/site-library/Repitools’