############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data PCAtools ### ############################################################################## ############################################################################## * checking for file ‘PCAtools/DESCRIPTION’ ... OK * preparing ‘PCAtools’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘PCAtools.Rmd’ using rmarkdown Warning: program compiled against libxml 212 using older 211 Warning: ggrepel: 18 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 22 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from lines 407-426 [ex9] (PCAtools.Rmd) Error: processing vignette 'PCAtools.Rmd' failed with diagnostics: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/proj4/libs/proj4.so': libproj.so.22: cannot open shared object file: No such file or directory --- failed re-building ‘PCAtools.Rmd’ SUMMARY: processing the following file failed: ‘PCAtools.Rmd’ Error: Vignette re-building failed. Execution halted