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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:MotifPeeker.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings MotifPeeker_0.99.13.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/MotifPeeker.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MotifPeeker/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MotifPeeker’ version ‘0.99.13’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 25 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MotifPeeker’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ...Warning: program compiled against libxml 212 using older 211
 OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  motif_enrichment.Rd: memes
  plot_motif_comparison.Rd: compare_motifs
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
MotifPeeker       94.585  7.055 116.434
motif_similarity   8.213  1.265  10.588
find_motifs        2.185  0.330   7.349
check_ENCODE       0.656  0.121   8.346
get_df_enrichment  0.198  0.284   5.224
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
    first remote error:
  Error in .check_valid_command_path(path): Command: /home/biocbuild/.cache/R/BiocFileCache/30afea352ae2cb_JASPAR2024_CORE_non-redundant_pfms_meme.txt, does not exist.
  
  Backtrace:
      ▆
   1. └─MotifPeeker::find_motifs(...) at test-denovo_motif_funcs.R:29:5
   2.   └─MotifPeeker:::bpapply(...)
   3.     ├─BiocParallel (local) apply_fun(X, FUN = FUN, BPPARAM = BPPARAM, ...)
   4.     └─BiocParallel (local) apply_fun(X, FUN = FUN, BPPARAM = BPPARAM, ...)
   5.       └─BiocParallel:::.bpinit(...)
  
  [ FAIL 1 | WARN 0 | SKIP 2 | PASS 690 ]
  Error: Test failures
  Execution halted
  Error while shutting down parallel: unable to terminate some child processes
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/MotifPeeker.Rcheck/00check.log’
for details.