############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MetMashR ### ############################################################################## ############################################################################## * checking for file ‘MetMashR/DESCRIPTION’ ... OK * preparing ‘MetMashR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Extending_MetMashR.Rmd’ using rmarkdown Quitting from lines 535-553 [unnamed-chunk-19] (Extending_MetMashR.Rmd) Error: processing vignette 'Extending_MetMashR.Rmd' failed with diagnostics: invalid class "openbabel_structure" object: The required package "ChemmineOB" is not installed. --- failed re-building ‘Extending_MetMashR.Rmd’ --- re-building ‘annotate_mixtures.Rmd’ using rmarkdown 2024-12-25 16:56:35.990 R[66818:183417152] XType: Using static font registry. --- finished re-building ‘annotate_mixtures.Rmd’ --- re-building ‘exploring_mtox.Rmd’ using rmarkdown Quitting from lines 149-170 [unnamed-chunk-7] (exploring_mtox.Rmd) Error: processing vignette 'exploring_mtox.Rmd' failed with diagnostics: invalid class "openbabel_structure" object: The required package "ChemmineOB" is not installed. --- failed re-building ‘exploring_mtox.Rmd’ --- re-building ‘using_MetMashR.Rmd’ using rmarkdown --- finished re-building ‘using_MetMashR.Rmd’ SUMMARY: processing the following files failed: ‘Extending_MetMashR.Rmd’ ‘exploring_mtox.Rmd’ Error: Vignette re-building failed. Execution halted