############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data LEA ### ############################################################################## ############################################################################## * checking for file ‘LEA/DESCRIPTION’ ... OK * preparing ‘LEA’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘LEA’ ... ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_LFMM.c -o R_LFMM.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_crossEntropy.c -o R_crossEntropy.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_createDataSet.c -o R_createDataSet.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_sNMF.c -o R_sNMF.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_ancestrymap2geno.c -o R_ancestrymap2geno.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_ancestrymap2lfmm.c -o R_ancestrymap2lfmm.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_geno2lfmm.c -o R_geno2lfmm.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_lfmm2geno.c -o R_lfmm2geno.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_pca.c -o R_pca.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_ped2geno.c -o R_ped2geno.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_ped2lfmm.c -o R_ped2lfmm.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_vcf2geno.c -o R_vcf2geno.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_tracyWidom.c -o R_tracyWidom.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_init_LEA.c -o R_init_LEA.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I. -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c bituint/bituint.c -o bituint/bituint.o bituint/bituint.c: In function ‘init_mat_bituint’: bituint/bituint.c:30:28: error: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration] 30 | *dat = (bituint *) Calloc(N * (*Mp) * sizeof(bituint), bituint); | ^~~~~~ | calloc bituint/bituint.c:30:64: error: expected expression before ‘bituint’ 30 | *dat = (bituint *) Calloc(N * (*Mp) * sizeof(bituint), bituint); | ^~~~~~~ make: *** [/home/biocbuild/R/R/etc/Makeconf:195: bituint/bituint.o] Error 1 ERROR: compilation failed for package ‘LEA’ * removing ‘/home/biocbuild/tmp/Rtmp2M4D16/Rinsta8d43786848b1/LEA’ ----------------------------------- ERROR: package installation failed