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### Running command:
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###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Gviz.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings Gviz_1.51.0.tar.gz
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* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/Gviz.Rcheck'
* using R Under development (unstable) (2024-10-26 r87273 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'Gviz/DESCRIPTION' ... OK
* this is package 'Gviz' version '1.51.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Gviz' can be installed ... OK
* checking installed package size ... INFO
  installed size is  5.1Mb
  sub-directories of 1Mb or more:
    R         1.7Mb
    extdata   2.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AlignmentsTrack-class.Rd: IRanges-class, GRanges-class, panel.grid
  AnnotationTrack-class.Rd: IRanges-class, GRanges-class, panel.grid
  BiomartGeneRegionTrack-class.Rd: Mart-class, getBM, GRanges-class,
    IRanges-class, panel.grid
  CustomTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  DataTrack-class.Rd: IRanges-class, panel.loess, panel.bwplot,
    horizonplot, GRanges-class, panel.grid
  GdObject-class.Rd: GRanges-class, IRanges-class, panel.grid
  GeneRegionTrack-class.Rd: IRanges-class, GRanges-class, panel.grid
  GenomeAxisTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  HighlightTrack-class.Rd: IRanges-class, GRanges-class, panel.grid
  IdeogramTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  NumericTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  OverlayTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  RangeTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  ReferenceTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  SequenceTrack-class.Rd: DNAStringSet-class, DNAString-class,
    BSgenome-class, GRanges-class, IRanges-class, panel.grid
  StackedTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  settings.Rd: panel.grid, panel.xyplot, panel.bwplot, horizonplot,
    panel.loess
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                              user system elapsed
SequenceTrack-class          31.14   0.64   32.03
AlignmentsTrack-class        18.47   0.98   19.50
AnnotationTrack-class         9.75   0.16   10.17
GeneRegionTrack-class         8.82   0.14    9.18
plotTracks                    5.78   0.01    5.89
BiomartGeneRegionTrack-class  5.36   0.12    5.70
GenomeAxisTrack-class         5.25   0.05    5.45
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbuild/bbs-3.21-bioc/meat/Gviz.Rcheck/00check.log'
for details.