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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:Gviz.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings Gviz_1.51.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/Gviz.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘Gviz/DESCRIPTION’ ... OK
* this is package ‘Gviz’ version ‘1.51.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Gviz’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AlignmentsTrack-class.Rd: IRanges-class, GRanges-class, panel.grid
  AnnotationTrack-class.Rd: IRanges-class, GRanges-class, panel.grid
  BiomartGeneRegionTrack-class.Rd: Mart-class, getBM, GRanges-class,
    IRanges-class, panel.grid
  CustomTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  DataTrack-class.Rd: IRanges-class, panel.loess, panel.bwplot,
    horizonplot, GRanges-class, panel.grid
  GdObject-class.Rd: GRanges-class, IRanges-class, panel.grid
  GeneRegionTrack-class.Rd: IRanges-class, GRanges-class, panel.grid
  GenomeAxisTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  HighlightTrack-class.Rd: IRanges-class, GRanges-class, panel.grid
  IdeogramTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  NumericTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  OverlayTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  RangeTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  ReferenceTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  SequenceTrack-class.Rd: DNAStringSet-class, DNAString-class,
    BSgenome-class, GRanges-class, IRanges-class, panel.grid
  StackedTrack-class.Rd: GRanges-class, IRanges-class, panel.grid
  settings.Rd: panel.grid, panel.xyplot, panel.bwplot, horizonplot,
    panel.loess
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
AlignmentsTrack-class 13.236  1.080  14.342
AnnotationTrack-class  8.118  0.144   8.266
GeneRegionTrack-class  6.445  0.181   6.697
plotTracks             5.240  0.013   5.329
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/Gviz.Rcheck/00check.log’
for details.