############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GrafGen.buildbin-libdir && mkdir GrafGen.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=GrafGen.buildbin-libdir GrafGen_1.3.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'GrafGen' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' using C++ compiler: 'G__~1.EXE (GCC) 13.3.0' g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c AncestrySnps.cpp -o AncestrySnps.o g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BedFileSnpGeno.cpp -o BedFileSnpGeno.o g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BimFileAncestrySnps.cpp -o BimFileAncestrySnps.o g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c FamFileSamples.cpp -o FamFileSamples.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GrafGenHp_init.c -o GrafGenHp_init.o g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GrafPop.cpp -o GrafPop.o g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SampleGenoAncestry.cpp -o SampleGenoAncestry.o g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SampleGenoDist.cpp -o SampleGenoDist.o g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Util.cpp -o Util.o g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/include" -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c VcfSampleAncestrySnpGeno.cpp -o VcfSampleAncestrySnpGeno.o g++ -std=gnu++17 -shared -s -static-libgcc -o GrafGen.dll tmp.def AncestrySnps.o BedFileSnpGeno.o BimFileAncestrySnps.o FamFileSamples.o GrafGenHp_init.o GrafPop.o SampleGenoAncestry.o SampleGenoDist.o Util.o VcfSampleAncestrySnpGeno.o -LE:/biocbuild/bbs-3.21-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR installing to E:/biocbuild/bbs-3.21-bioc/meat/GrafGen.buildbin-libdir/00LOCK-GrafGen/00new/GrafGen/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'GrafGen' as GrafGen_1.3.0.zip * DONE (GrafGen)