############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ExperimentHub_2.99.5.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/ExperimentHub.Rcheck’ * using R version 4.5.0 Patched (2025-04-21 r88169) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 16.0.0 (clang-1600.0.26.6) GNU Fortran (GCC) 14.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ExperimentHub/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ExperimentHub’ version ‘2.99.5’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ExperimentHub’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING checkRd: (5) ExperimentHub-class.Rd:74-87: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:96-99: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:100-103: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:104-107: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:108-112: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:113-119: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:120-124: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:125-130: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:131-165: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:173-177: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:178-182: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:183-194: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:195-216: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:217-225: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:226-230: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:231-235: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:242-246: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:247-251: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:252-263: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:264-267: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:268-271: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:272-279: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:280-287: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:288-293: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:300-304: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:305-309: \item in \describe must have non-empty label * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/Users/biocbuild/bbs-3.22-bioc/meat/ExperimentHub.Rcheck/00check.log’ for details.