############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r EnhancedVolcano -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data EnhancedVolcano ### ############################################################################## ############################################################################## * checking for file 'EnhancedVolcano/DESCRIPTION' ... OK * preparing 'EnhancedVolcano': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'EnhancedVolcano.Rmd' using rmarkdown Warning: ggrepel: 11 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 6 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 9 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from lines 626-669 [ex13] (EnhancedVolcano.Rmd) Error: processing vignette 'EnhancedVolcano.Rmd' failed with diagnostics: there is no package called 'proj4' --- failed re-building 'EnhancedVolcano.Rmd' SUMMARY: processing the following file failed: 'EnhancedVolcano.Rmd' Error: Vignette re-building failed. Execution halted