############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data DEXSeq ### ############################################################################## ############################################################################## * checking for file ‘DEXSeq/DESCRIPTION’ ... OK * preparing ‘DEXSeq’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DEXSeq.Rmd’ using rmarkdown Warning: program compiled against libxml 212 using older 211 trying URL 'https://ftp.ensembl.org/pub/release-62/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.25.62.gtf.gz' Content type 'application/x-gzip' length 2739429 bytes (2.6 MB) ================================================== downloaded 2.6 MB Quitting from lines 150-151 [startVignette] (DEXSeq.Rmd) Error: processing vignette 'DEXSeq.Rmd' failed with diagnostics: there is no package called 'pasilla' --- failed re-building ‘DEXSeq.Rmd’ SUMMARY: processing the following file failed: ‘DEXSeq.Rmd’ Error: Vignette re-building failed. Execution halted