############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL ClassifyR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’ * installing *source* package ‘ClassifyR’ ... ** using staged installation ** libs using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’ using C++11 /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++11 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c coxformatrices.cpp -o coxformatrices.o coxformatrices.cpp: In function ‘void coxmat(double*, int*, int*, double*, double*, double*, int*, int*, int*, double*, int*, double*, double*, int*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*)’: coxformatrices.cpp:23:16: warning: unused variable ‘sclback2’ [-Wunused-variable] 23 | double sclback2=*sctest2; | ^~~~~~~~ coxformatrices.cpp:24:16: warning: unused variable ‘sclback3’ [-Wunused-variable] 24 | double sclback3=*sctest3; | ^~~~~~~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++11 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o ClassifyR.so coxformatrices.o -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/00LOCK-ClassifyR/00new/ClassifyR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘ROCplot’ with signature ‘"ClassifyResult"’: no definition for class “ClassifyResult” ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ClassifyR)