Bioconductor Package Maintainer
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/Rsamtools |
| Branch: RELEASE_3_6 |
| Last Commit: 61b365f |
| Last Changed Date: 2017-10-30 12:39:29 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:20:09 -0400 (Thu, 12 Apr 2018).
| Package 1216/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Rsamtools 1.30.0 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Rsamtools |
| Version: 1.30.0 |
| Command: cd Rsamtools.buildbin-libdir/Rsamtools && zip -r ../../Rsamtools_1.30.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 05:01:30 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 05:01:59 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 29.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Rsamtools_1.30.0.zip |
| PackageFileSize: 8.661 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd Rsamtools.buildbin-libdir/Rsamtools && zip -r ../../Rsamtools_1.30.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: DESCRIPTION (332 bytes security) (deflated 41%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 68%) adding: doc/Rsamtools-Overview.pdf (332 bytes security) (deflated 12%) adding: doc/Rsamtools-Overview.R (332 bytes security) (deflated 76%) adding: doc/Rsamtools-Overview.Rnw (332 bytes security) (deflated 62%) adding: doc/Rsamtools-UsingCLibraries.pdf (332 bytes security) (deflated 8%) adding: doc/Rsamtools-UsingCLibraries.R (332 bytes security) (deflated 48%) adding: doc/Rsamtools-UsingCLibraries.Rnw (332 bytes security) (deflated 57%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/ce2dict1.fa (332 bytes security) (deflated 47%) adding: extdata/ce2dict1.fa.fai (332 bytes security) (deflated 44%) adding: extdata/ex1.bam (332 bytes security) (deflated 0%) adding: extdata/ex1.bam.bai (332 bytes security) (deflated 63%) adding: extdata/ex1.bcf (332 bytes security) (deflated 0%) adding: extdata/ex1.bcf.bci (332 bytes security) (deflated 26%) adding: extdata/ex1.sam (332 bytes security) (deflated 80%) adding: extdata/example.gtf.gz (332 bytes security) (stored 0%) adding: extdata/example.gtf.gz.tbi (332 bytes security) (deflated 5%) adding: extdata/example_from_SAM_Spec.bam (332 bytes security) (deflated 7%) adding: extdata/example_from_SAM_Spec.bam.bai (332 bytes security) (deflated 59%) adding: extdata/example_from_SAM_Spec.sam (332 bytes security) (deflated 45%) adding: extdata/no_which_buffered_pileup.bam (332 bytes security) (deflated 16%) adding: extdata/no_which_buffered_pileup.bam.bai (332 bytes security) (deflated 69%) adding: extdata/no_which_buffered_pileup.sam (332 bytes security) (deflated 60%) adding: extdata/no_which_whole_file.bam (332 bytes security) (deflated 16%) adding: extdata/no_which_whole_file.bam.bai (332 bytes security) (deflated 69%) adding: extdata/no_which_whole_file.sam (332 bytes security) (deflated 47%) adding: extdata/olaps.Rda (332 bytes security) (deflated 3%) adding: extdata/pileup.txt (332 bytes security) (deflated 47%) adding: extdata/querybins.bam (332 bytes security) (deflated 18%) adding: extdata/querybins.bam.bai (332 bytes security) (deflated 59%) adding: extdata/querybins.sam (332 bytes security) (deflated 31%) adding: extdata/revbins.bam (332 bytes security) (deflated 5%) adding: extdata/revbins.bam.bai (332 bytes security) (deflated 76%) adding: extdata/revbins.sam (332 bytes security) (deflated 71%) adding: extdata/samtools-github.txt (332 bytes security) (stored 0%) adding: extdata/slxMaq09_urls.txt (332 bytes security) (deflated 91%) adding: extdata/tagfilter.bam (332 bytes security) (deflated 7%) adding: extdata/tagfilter.bam.bai (332 bytes security) (deflated 80%) adding: extdata/tagfilter.sam (332 bytes security) (deflated 75%) adding: extdata/tiny.bam (332 bytes security) (stored 0%) adding: extdata/tiny.bam.bai (332 bytes security) (deflated 85%) adding: extdata/tiny.sam (332 bytes security) (deflated 80%) adding: extdata/tophat/ (372 bytes security) (stored 0%) adding: extdata/tophat/accepted_hits.sam (332 bytes security) (deflated 90%) adding: extdata/tophat/coverage.wig (332 bytes security) (deflated 78%) adding: extdata/tophat/junctions.bed (332 bytes security) (deflated 34%) adding: extdata/tophat/README (332 bytes security) (stored 0%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 84%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/Rsamtools.rdb (332 bytes security) (deflated 1%) adding: help/Rsamtools.rdx (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 92%) adding: html/applyPileups.html (332 bytes security) (deflated 59%) adding: html/ApplyPileupsParam-class.html (332 bytes security) (deflated 70%) adding: html/BamFile-class.html (332 bytes security) (deflated 71%) adding: html/BamViews-class.html (332 bytes security) (deflated 75%) adding: html/BcfFile-class.html (332 bytes security) (deflated 63%) adding: html/defunct.html (332 bytes security) (deflated 43%) adding: html/deprecated.html (332 bytes security) (deflated 45%) adding: html/FaFile-class.html (332 bytes security) (deflated 68%) adding: html/headerTabix.html (332 bytes security) (deflated 51%) adding: html/indexTabix.html (332 bytes security) (deflated 60%) adding: html/pileup.html (332 bytes security) (deflated 70%) adding: html/PileupFiles-class.html (332 bytes security) (deflated 67%) adding: html/quickBamFlagSummary.html (332 bytes security) (deflated 61%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/readPileup.html (332 bytes security) (deflated 59%) adding: html/Rsamtools-package.html (332 bytes security) (deflated 53%) adding: html/RsamtoolsFile-class.html (332 bytes security) (deflated 62%) adding: html/RsamtoolsFileList-class.html (332 bytes security) (deflated 61%) adding: html/scanBam.html (332 bytes security) (deflated 69%) adding: html/ScanBamParam-class.html (332 bytes security) (deflated 70%) adding: html/scanBcf.html (332 bytes security) (deflated 65%) adding: html/ScanBcfParam-class.html (332 bytes security) (deflated 70%) adding: html/scanFa.html (332 bytes security) (deflated 65%) adding: html/scanTabix.html (332 bytes security) (deflated 55%) adding: html/seqnamesTabix.html (332 bytes security) (deflated 51%) adding: html/TabixFile-class.html (332 bytes security) (deflated 66%) adding: html/testPairedEndBam.html (332 bytes security) (deflated 52%) adding: html/zip.html (332 bytes security) (deflated 56%) adding: include/ (548 bytes security) (stored 0%) adding: include/samtools/ (548 bytes security) (stored 0%) adding: include/samtools/bam.h (332 bytes security) (deflated 70%) adding: include/samtools/bam_endian.h (332 bytes security) (deflated 68%) adding: include/samtools/bcftools/ (548 bytes security) (stored 0%) adding: include/samtools/bcftools/bcf.h (332 bytes security) (deflated 61%) adding: include/samtools/bcftools/prob1.h (332 bytes security) (deflated 59%) adding: include/samtools/bgzf.h (332 bytes security) (deflated 60%) adding: include/samtools/faidx.h (332 bytes security) (deflated 62%) adding: include/samtools/kaln.h (332 bytes security) (deflated 49%) adding: include/samtools/khash.h (332 bytes security) (deflated 75%) adding: include/samtools/knetfile.h (332 bytes security) (deflated 56%) adding: include/samtools/kprobaln.h (332 bytes security) (deflated 44%) adding: include/samtools/kseq.h (332 bytes security) (deflated 66%) adding: include/samtools/ksort.h (332 bytes security) (deflated 67%) adding: include/samtools/kstring.h (332 bytes security) (deflated 63%) adding: include/samtools/razf.h (332 bytes security) (deflated 53%) adding: include/samtools/sam.h (332 bytes security) (deflated 58%) adding: include/samtools/sam_header.h (332 bytes security) (deflated 62%) adding: include/tabix/ (548 bytes security) (stored 0%) adding: include/tabix/bgzf.h (332 bytes security) (deflated 60%) adding: include/tabix/knetfile.h (332 bytes security) (deflated 56%) adding: include/tabix/kstring.h (332 bytes security) (deflated 63%) adding: include/tabix/tabix.h (332 bytes security) (deflated 59%) adding: INDEX (332 bytes security) (deflated 66%) adding: libs/ (372 bytes security) (stored 0%) adding: libs/i386/ (372 bytes security) (stored 0%) adding: libs/i386/Rsamtools.dll (332 bytes security) (deflated 62%) adding: libs/x64/ (372 bytes security) (stored 0%) adding: libs/x64/Rsamtools.dll (332 bytes security) (deflated 62%) adding: LICENSE (332 bytes security) (deflated 41%) adding: MD5 (332 bytes security) (deflated 53%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 61%) adding: NEWS (332 bytes security) (deflated 64%) adding: R/ (372 bytes security) (stored 0%) adding: R/Rsamtools (332 bytes security) (deflated 41%) adding: R/Rsamtools.rdb (332 bytes security) (deflated 37%) adding: R/Rsamtools.rdx (332 bytes security) (deflated 3%) adding: scripts/ (372 bytes security) (stored 0%) adding: scripts/BamViews-1000g.R (332 bytes security) (deflated 53%) adding: scripts/features.R (332 bytes security) (deflated 52%) adding: scripts/remote_test.R (332 bytes security) (deflated 56%) adding: scripts/update-samtools.sh (332 bytes security) (deflated 66%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/cases/ (372 bytes security) (stored 0%) adding: unitTests/cases/ex1.sam.gz (332 bytes security) (deflated 0%) adding: unitTests/cases/ex1_noindex.bam (332 bytes security) (deflated 0%) adding: unitTests/cases/ex1_shuf1000.bam (332 bytes security) (deflated 0%) adding: unitTests/cases/ex1_shuf1000.bam.bai (332 bytes security) (deflated 56%) adding: unitTests/cases/ex1_unsort.bam (332 bytes security) (deflated 0%) adding: unitTests/cases/ex1_zero_index.bam.bai (332 bytes security) (stored 0%) adding: unitTests/cases/no_header_line.vcf (332 bytes security) (deflated 56%) adding: unitTests/cases/no_SAMPLE_header.vcf (332 bytes security) (deflated 49%) adding: unitTests/cases/pileup-no-stars.txt (332 bytes security) (deflated 40%) adding: unitTests/cases/plp_refskip.bam (332 bytes security) (deflated 12%) adding: unitTests/cases/plp_refskip.bam.bai (332 bytes security) (deflated 59%) adding: unitTests/test_applyPileups.R (332 bytes security) (deflated 82%) adding: unitTests/test_asBam.R (332 bytes security) (deflated 48%) adding: unitTests/test_bam.R (332 bytes security) (deflated 77%) adding: unitTests/test_BamFile.R (332 bytes security) (deflated 80%) adding: unitTests/test_BamViews.R (332 bytes security) (deflated 75%) adding: unitTests/test_bam_count.R (332 bytes security) (deflated 69%) adding: unitTests/test_bam_header.R (332 bytes security) (deflated 28%) adding: unitTests/test_BcfFile.R (332 bytes security) (deflated 69%) adding: unitTests/test_compression.R (332 bytes security) (deflated 65%) adding: unitTests/test_FaFile.R (332 bytes security) (deflated 73%) adding: unitTests/test_mapqfilter.R (332 bytes security) (deflated 61%) adding: unitTests/test_phred2ASCIIOffset.R (332 bytes security) (deflated 72%) adding: unitTests/test_pileup_nowhich.R (332 bytes security) (deflated 75%) adding: unitTests/test_pileup_querybins.R (332 bytes security) (deflated 86%) adding: unitTests/test_pileup_revbins.R (332 bytes security) (deflated 87%) adding: unitTests/test_pileup_single_range.R (332 bytes security) (deflated 89%) adding: unitTests/test_readPileup.R (332 bytes security) (deflated 63%) adding: unitTests/test_RsamtoolsFile.R (332 bytes security) (deflated 76%) adding: unitTests/test_scanBamFlag.R (332 bytes security) (deflated 43%) adding: unitTests/test_sortBam_test.R (332 bytes security) (deflated 55%) adding: unitTests/test_TabixFile.R (332 bytes security) (deflated 65%) adding: unitTests/test_tagfilter.R (332 bytes security) (deflated 74%) adding: unitTests/test_testPairedEndBam.R (332 bytes security) (deflated 31%) adding: unitTests/test_utilities.R (332 bytes security) (deflated 51%) adding: usretc/ (548 bytes security) (stored 0%) adding: usretc/i386/ (548 bytes security) (stored 0%) adding: usretc/i386/Rsamtools.mk (332 bytes security) (deflated 58%) adding: usretc/x64/ (548 bytes security) (stored 0%) adding: usretc/x64/Rsamtools.mk (332 bytes security) (deflated 58%) adding: usrlib/ (548 bytes security) (stored 0%) adding: usrlib/i386/ (548 bytes security) (stored 0%) adding: usrlib/i386/libbam.a (332 bytes security) (deflated 58%) adding: usrlib/i386/libbcf.a (332 bytes security) (deflated 59%) adding: usrlib/i386/libtabix.a (332 bytes security) (deflated 55%) adding: usrlib/x64/ (548 bytes security) (stored 0%) adding: usrlib/x64/libbam.a (332 bytes security) (deflated 56%) adding: usrlib/x64/libbcf.a (332 bytes security) (deflated 58%) adding: usrlib/x64/libtabix.a (332 bytes security) (deflated 54%)