############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex ### ############################################################################## ############################################################################## * checking for file ‘BioPlex/DESCRIPTION’ ... OK * preparing ‘BioPlex’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘BasicChecks.Rmd’ using rmarkdown Quitting from BasicChecks.Rmd:50-55 [orgdb] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.Hub_get1()`: ! no records found for the given index --- Backtrace: ▆ 1. ├─orgdb[[1]] 2. └─orgdb[[1]] 3. └─AnnotationHub (local) .local(x, i, j = j, ...) 4. └─AnnotationHub:::.Hub_get1(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BasicChecks.Rmd' failed with diagnostics: no records found for the given index --- failed re-building ‘BasicChecks.Rmd’ --- re-building ‘BioPlex.Rmd’ using rmarkdown Quitting from BioPlex.Rmd:101-106 [orgdb] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.Hub_get1()`: ! no records found for the given index --- Backtrace: ▆ 1. ├─orgdb[[1]] 2. └─orgdb[[1]] 3. └─AnnotationHub (local) .local(x, i, j = j, ...) 4. └─AnnotationHub:::.Hub_get1(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BioPlex.Rmd' failed with diagnostics: no records found for the given index --- failed re-building ‘BioPlex.Rmd’ SUMMARY: processing the following files failed: ‘BasicChecks.Rmd’ ‘BioPlex.Rmd’ Error: Vignette re-building failed. Execution halted