############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedTCGAData ### ############################################################################## ############################################################################## * checking for file ‘curatedTCGAData/DESCRIPTION’ ... OK * preparing ‘curatedTCGAData’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘curatedTCGAData.Rmd’ using rmarkdown Quitting from curatedTCGAData.Rmd:26-30 [load-packages] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! package or namespace load failed for 'TCGAutils': object 'microRNAs' is not exported by 'namespace:GenomicFeatures' --- Backtrace: ▆ 1. └─base::library(TCGAutils) 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'curatedTCGAData.Rmd' failed with diagnostics: package or namespace load failed for 'TCGAutils': object 'microRNAs' is not exported by 'namespace:GenomicFeatures' --- failed re-building ‘curatedTCGAData.Rmd’ SUMMARY: processing the following file failed: ‘curatedTCGAData.Rmd’ Error: Vignette re-building failed. Execution halted