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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RNAmodR.RiboMethSeq
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* checking for file ‘RNAmodR.RiboMethSeq/DESCRIPTION’ ... OK
* preparing ‘RNAmodR.RiboMethSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘RNAmodR.RiboMethSeq.Rmd’ using rmarkdown
[E::idx_find_and_load] Could not retrieve index file for '/home/biocbuild/.cache/R/ExperimentHub/ca93d75fbf076_2530'
[E::idx_find_and_load] Could not retrieve index file for '/home/biocbuild/.cache/R/ExperimentHub/ca93d4ea0fe5_2532'
[E::idx_find_and_load] Could not retrieve index file for '/home/biocbuild/.cache/R/ExperimentHub/ca93d75fbf076_2530'
[E::idx_find_and_load] Could not retrieve index file for '/home/biocbuild/.cache/R/ExperimentHub/ca93d4ea0fe5_2532'
[E::idx_find_and_load] Could not retrieve index file for '/home/biocbuild/.cache/R/ExperimentHub/ca93d75fbf076_2530'
[E::idx_find_and_load] Could not retrieve index file for '/home/biocbuild/.cache/R/ExperimentHub/ca93d4ea0fe5_2532'

Quitting from RNAmodR.RiboMethSeq.Rmd:78-81 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! BiocParallel errors
  2 remote errors, element index: 1, 2
  0 unevaluated and other errors
  first remote error:
Error in h(simpleError(msg, call)): error in evaluating the argument 'table' in selecting a method for function '%in%': error in evaluating the argument 'x' in selecting a method for function 'shortName': Biostrings internal error, please report
---
Backtrace:
     ▆
  1. └─RNAmodR.RiboMethSeq::ModSetRiboMethSeq(...)
  2.   ├─RNAmodR::ModifierSet(...)
  3.   └─RNAmodR::ModifierSet(...)
  4.     └─RNAmodR:::.bamfiles_to_ModifierSet(...)
  5.       ├─BiocParallel::bpmapply(...)
  6.       └─BiocParallel::bpmapply(...)
  7.         ├─BiocParallel::bpmapply(...)
  8.         └─BiocParallel::bpmapply(...)
  9.           ├─BiocParallel::bplapply(...)
 10.           └─BiocParallel::bplapply(...)
 11.             └─BiocParallel:::.bpinit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RNAmodR.RiboMethSeq.Rmd' failed with diagnostics:
BiocParallel errors
  2 remote errors, element index: 1, 2
  0 unevaluated and other errors
  first remote error:
Error in h(simpleError(msg, call)): error in evaluating the argument 'table' in selecting a method for function '%in%': error in evaluating the argument 'x' in selecting a method for function 'shortName': Biostrings internal error, please report

--- failed re-building ‘RNAmodR.RiboMethSeq.Rmd’

SUMMARY: processing the following file failed:
  ‘RNAmodR.RiboMethSeq.Rmd’

Error: Vignette re-building failed.
Execution halted