############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel ### ############################################################################## ############################################################################## * checking for file ‘BiocParallel/DESCRIPTION’ ... OK * preparing ‘BiocParallel’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BiocParallel_BatchtoolsParam.Rmd’ using rmarkdown --- finished re-building ‘BiocParallel_BatchtoolsParam.Rmd’ --- re-building ‘Errors_Logs_And_Debugging.Rmd’ using rmarkdown --- finished re-building ‘Errors_Logs_And_Debugging.Rmd’ --- re-building ‘Introduction_To_BiocParallel.Rmd’ using rmarkdown Quitting from Introduction_To_BiocParallel.Rmd:385-388 [forking_gr] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! package 'Rsamtools' could not be loaded --- Backtrace: ▆ 1. └─base::library(GenomicAlignments) 2. └─base::.getRequiredPackages2(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Introduction_To_BiocParallel.Rmd' failed with diagnostics: package 'Rsamtools' could not be loaded --- failed re-building ‘Introduction_To_BiocParallel.Rmd’ --- re-building ‘Random_Numbers.Rmd’ using rmarkdown --- finished re-building ‘Random_Numbers.Rmd’ SUMMARY: processing the following file failed: ‘Introduction_To_BiocParallel.Rmd’ Error: Vignette re-building failed. Execution halted