############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocFileCache ### ############################################################################## ############################################################################## * checking for file ‘BiocFileCache/DESCRIPTION’ ... OK * preparing ‘BiocFileCache’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BiocFileCache.Rmd’ using rmarkdown --- finished re-building ‘BiocFileCache.Rmd’ --- re-building ‘BiocFileCache_Troubleshooting.Rmd’ using rmarkdown --- finished re-building ‘BiocFileCache_Troubleshooting.Rmd’ --- re-building ‘BiocFileCache_UseCases.Rmd’ using rmarkdown Quitting from BiocFileCache_UseCases.Rmd:191-221 [ensemblremote] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! package or namespace load failed for 'rtracklayer': class "Seqinfo" is not exported by 'namespace:GenomeInfoDb' --- Backtrace: ▆ 1. ├─base::suppressPackageStartupMessages(...) 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 3. └─base::library(rtracklayer) 4. └─base::tryCatch(...) 5. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BiocFileCache_UseCases.Rmd' failed with diagnostics: package or namespace load failed for 'rtracklayer': class "Seqinfo" is not exported by 'namespace:GenomeInfoDb' --- failed re-building ‘BiocFileCache_UseCases.Rmd’ SUMMARY: processing the following file failed: ‘BiocFileCache_UseCases.Rmd’ Error: Vignette re-building failed. Execution halted