############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data structToolbox ### ############################################################################## ############################################################################## * checking for file ‘structToolbox/DESCRIPTION’ ... OK * preparing ‘structToolbox’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘data_analysis_omics_using_the_structtoolbox.Rmd’ using rmarkdown 2025-12-12 10:59:55.093 R[51633:244950218] XType: Using static font registry. Quitting from data_analysis_omics_using_the_structtoolbox.Rmd:251-253 [unnamed-chunk-20] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! 'Ontology' is not an exported object from 'namespace:rols' --- Backtrace: ▆ 1. ├─struct::ontology(P, cache = ontology_cache()) 2. └─struct::ontology(P, cache = ontology_cache()) 3. ├─BiocGenerics::lapply(...) 4. └─base::lapply(...) 5. └─struct (local) FUN(X[[i]], ...) 6. └─struct::ontology_list(cache[[x]]) 7. ├─BiocGenerics::lapply(...) 8. └─base::lapply(...) 9. └─struct (local) FUN(X[[i]], ...) 10. └─struct::ontology_term(id = x) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'data_analysis_omics_using_the_structtoolbox.Rmd' failed with diagnostics: 'Ontology' is not an exported object from 'namespace:rols' --- failed re-building ‘data_analysis_omics_using_the_structtoolbox.Rmd’ SUMMARY: processing the following file failed: ‘data_analysis_omics_using_the_structtoolbox.Rmd’ Error: Vignette re-building failed. Execution halted