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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pgxRpi
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* checking for file ‘pgxRpi/DESCRIPTION’ ... OK
* preparing ‘pgxRpi’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Introduction_1_load_metadata.Rmd’ using rmarkdown
2025-02-18 17:45:51.671 R[80016:204953813] XType: com.apple.fonts is not accessible.
2025-02-18 17:45:51.671 R[80016:204953813] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘Introduction_1_load_metadata.Rmd’

--- re-building ‘Introduction_2_query_variants.Rmd’ using rmarkdown

Quitting from lines 145-146 [unnamed-chunk-9] (Introduction_2_query_variants.Rmd)
Error: processing vignette 'Introduction_2_query_variants.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘Introduction_2_query_variants.Rmd’

--- re-building ‘Introduction_3_access_cnv_frequency.Rmd’ using rmarkdown
--- finished re-building ‘Introduction_3_access_cnv_frequency.Rmd’

--- re-building ‘Introduction_4_process_pgxseg.Rmd’ using rmarkdown
--- finished re-building ‘Introduction_4_process_pgxseg.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_2_query_variants.Rmd’

Error: Vignette re-building failed.
Execution halted