############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SPONGE ### ############################################################################## ############################################################################## * checking for file ‘SPONGE/DESCRIPTION’ ... OK * preparing ‘SPONGE’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SPONGE.Rmd’ using rmarkdown 2025-02-21 18:26:41.211 R[35682:234475677] XType: com.apple.fonts is not accessible. 2025-02-21 18:26:41.212 R[35682:234475677] XType: XTFontStaticRegistry is enabled. Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "SPONGE vignette", and the latter is "Sparse Partial correlation ON Gene Expression with SPONGE". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘SPONGE.Rmd’ --- re-building ‘spongEffects.Rmd’ using rmarkdown Quitting from lines 265-272 [unnamed-chunk-25] (spongEffects.Rmd) Error: processing vignette 'spongEffects.Rmd' failed with diagnostics: Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable. Look at ?useEnsembl for details on how to try a mirror site. --- failed re-building ‘spongEffects.Rmd’ SUMMARY: processing the following file failed: ‘spongEffects.Rmd’ Error: Vignette re-building failed. Execution halted