############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data RCAS ### ############################################################################## ############################################################################## * checking for file ‘RCAS/DESCRIPTION’ ... OK * preparing ‘RCAS’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘RCAS.metaAnalysis.vignette.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "How to do meta-analysis of multiple samples", and the latter is "How to do meta-analysis of CLIP-seq peaks from multiple samples with RCAS". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘RCAS.metaAnalysis.vignette.Rmd’ --- re-building ‘RCAS.vignette.Rmd’ using rmarkdown Warning: program compiled against libxml 212 using older 211 Error in x$.self$finalize() : attempt to apply non-function Warning: call dbDisconnect() when finished working with a connection Quitting from lines 245-251 [GO analysis] (RCAS.vignette.Rmd) Error: processing vignette 'RCAS.vignette.Rmd' failed with diagnostics: There's an issue with your request to g:Profiler. Error code: 301. Please double check your input. If this doesn't help, then check your internet connection or contact us with a reproducible example on biit.support@ut.ee --- failed re-building ‘RCAS.vignette.Rmd’ SUMMARY: processing the following file failed: ‘RCAS.vignette.Rmd’ Error: Vignette re-building failed. Execution halted