############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DmelSGI ### ############################################################################## ############################################################################## * checking for file ‘DmelSGI/DESCRIPTION’ ... OK * preparing ‘DmelSGI’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DmelSGI.Rnw’ using knitr \section{Re-analysis of a genetic interaction screen and experimental design} \label{secReanalysisHorn} The choice of the target--query experimental design was based on our re-analysis of a symmetric genetic interaction matrix of 93 genes described by~\cite{horn2011mapping}. Quitting from lines 10-16 [ReanalysisOfHornEtALLoadLibrary] (./src/sec02_ReanalysisOfHornEtAl.Rnw) Quitting from lines 91-91 [DmelSGIreanalysisOfHornEtAl] (DmelSGI.Rnw) Error: processing vignette 'DmelSGI.Rnw' failed with diagnostics: there is no package called 'RNAinteractMAPK' --- failed re-building ‘DmelSGI.Rnw’ SUMMARY: processing the following file failed: ‘DmelSGI.Rnw’ Error: Vignette re-building failed. Execution halted