############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data slingshot ### ############################################################################## ############################################################################## * checking for file ‘slingshot/DESCRIPTION’ ... OK * preparing ‘slingshot’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘conditionsVignette.Rmd’ using rmarkdown --- finished re-building ‘conditionsVignette.Rmd’ --- re-building ‘vignette.Rmd’ using rmarkdown Quitting from vignette.Rmd:275-277 [sling_sce] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `mst()`: ! At vendor/cigraph/src/misc/spanning_trees.c:283 : Weigths must not contain NaN values. Invalid value --- Backtrace: ▆ 1. ├─slingshot::slingshot(sce, clusterLabels = "GMM", reducedDim = "PCA") 2. └─slingshot::slingshot(sce, clusterLabels = "GMM", reducedDim = "PCA") 3. └─slingshot (local) .local(data, clusterLabels, ...) 4. ├─slingshot::slingshot(...) 5. └─slingshot::slingshot(...) 6. ├─slingshot::slingshot(...) 7. └─slingshot::slingshot(...) 8. └─slingshot (local) .local(data, clusterLabels, ...) 9. ├─slingshot::getLineages(...) 10. └─slingshot::getLineages(...) 11. ├─slingshot::getLineages(...) 12. └─slingshot::getLineages(...) 13. └─slingshot (local) .local(data, clusterLabels, ...) 14. ├─TrajectoryUtils::createClusterMST(...) 15. └─TrajectoryUtils::createClusterMST(...) 16. └─TrajectoryUtils (local) .local(x, ...) 17. └─igraph::minimum.spanning.tree(g) 18. └─igraph::mst(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vignette.Rmd' failed with diagnostics: At vendor/cigraph/src/misc/spanning_trees.c:283 : Weigths must not contain NaN values. Invalid value --- failed re-building ‘vignette.Rmd’ SUMMARY: processing the following file failed: ‘vignette.Rmd’ Error: Vignette re-building failed. Execution halted