############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg ### ############################################################################## ############################################################################## * checking for file ‘pareg/DESCRIPTION’ ... OK * preparing ‘pareg’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘pareg.Rmd’ using rmarkdown Channels: - anaconda Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/pareg/1.10.0/pareg added / updated specs: - python=3.10.14 The following packages will be downloaded: package | build ---------------------------|----------------- _libgcc_mutex-0.1 | main 3 KB anaconda _openmp_mutex-5.1 | 1_gnu 20 KB anaconda bzip2-1.0.8 | h5eee18b_6 418 KB anaconda ca-certificates-2024.9.24 | h06a4308_0 137 KB anaconda ld_impl_linux-64-2.40 | h12ee557_0 706 KB anaconda libffi-3.4.4 | h6a678d5_1 150 KB anaconda libgcc-ng-11.2.0 | h1234567_1 8.5 MB anaconda libgomp-11.2.0 | h1234567_1 560 KB anaconda libstdcxx-ng-11.2.0 | h1234567_1 6.1 MB anaconda libuuid-1.41.5 | h5eee18b_0 29 KB anaconda ncurses-6.4 | h6a678d5_0 1.1 MB anaconda openssl-3.0.15 | h5eee18b_0 5.2 MB anaconda pip-24.2 | py310h06a4308_0 2.2 MB anaconda python-3.10.14 | h955ad1f_1 27.7 MB anaconda readline-8.2 | h5eee18b_0 457 KB anaconda setuptools-75.1.0 | py310h06a4308_0 1.7 MB anaconda sqlite-3.45.3 | h5eee18b_0 1.6 MB anaconda tk-8.6.14 | h39e8969_0 3.4 MB anaconda tzdata-2024b | h04d1e81_0 121 KB anaconda wheel-0.44.0 | py310h06a4308_0 103 KB anaconda xz-5.4.6 | h5eee18b_1 700 KB anaconda zlib-1.2.13 | h5eee18b_1 124 KB anaconda ------------------------------------------------------------ Total: 61.1 MB The following NEW packages will be INSTALLED: _libgcc_mutex anaconda/linux-64::_libgcc_mutex-0.1-main _openmp_mutex anaconda/linux-64::_openmp_mutex-5.1-1_gnu bzip2 anaconda/linux-64::bzip2-1.0.8-h5eee18b_6 ca-certificates anaconda/linux-64::ca-certificates-2024.9.24-h06a4308_0 ld_impl_linux-64 anaconda/linux-64::ld_impl_linux-64-2.40-h12ee557_0 libffi anaconda/linux-64::libffi-3.4.4-h6a678d5_1 libgcc-ng anaconda/linux-64::libgcc-ng-11.2.0-h1234567_1 libgomp anaconda/linux-64::libgomp-11.2.0-h1234567_1 libstdcxx-ng anaconda/linux-64::libstdcxx-ng-11.2.0-h1234567_1 libuuid anaconda/linux-64::libuuid-1.41.5-h5eee18b_0 ncurses anaconda/linux-64::ncurses-6.4-h6a678d5_0 openssl anaconda/linux-64::openssl-3.0.15-h5eee18b_0 pip anaconda/linux-64::pip-24.2-py310h06a4308_0 python anaconda/linux-64::python-3.10.14-h955ad1f_1 readline anaconda/linux-64::readline-8.2-h5eee18b_0 setuptools anaconda/linux-64::setuptools-75.1.0-py310h06a4308_0 sqlite anaconda/linux-64::sqlite-3.45.3-h5eee18b_0 tk anaconda/linux-64::tk-8.6.14-h39e8969_0 tzdata anaconda/noarch::tzdata-2024b-h04d1e81_0 wheel anaconda/linux-64::wheel-0.44.0-py310h06a4308_0 xz anaconda/linux-64::xz-5.4.6-h5eee18b_1 zlib anaconda/linux-64::zlib-1.2.13-h5eee18b_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - anaconda Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done # All requested packages already installed. Channels: - anaconda Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed LibMambaUnsatisfiableError: Encountered problems while solving: - nothing provides openssl >=1.1.1,<1.1.2.0a0 needed by python-3.7.1-h0371630_3 Could not solve for environment specs The following packages are incompatible ├─ python 3.10.14** is installable and it requires │ └─ openssl >=3.0.13,<4.0a0 , which can be installed; └─ tensorflow 2.10.0** is not installable because there are no viable options ├─ tensorflow 2.10.0 would require │ └─ tensorflow-base [2.10.0 eigen_py37h1969d1f_0|2.10.0 gpu_py37h6559e04_0|2.10.0 mkl_py37hb9daa73_0], which requires │ └─ python >=3.7,<3.8.0a0 but there are no viable options │ ├─ python [3.7.0|3.7.1|...|3.7.9] conflicts with any installable versions previously reported; │ └─ python 3.7.1 would require │ └─ openssl >=1.1.1,<1.1.2.0a0 , which does not exist (perhaps a missing channel); ├─ tensorflow 2.10.0 would require │ └─ tensorflow-base [2.10.0 eigen_py310h1969d1f_0|2.10.0 gpu_py310h6559e04_0|2.10.0 mkl_py310hb9daa73_0], which requires │ └─ openssl >=1.1.1q,<1.1.2a , which conflicts with any installable versions previously reported; ├─ tensorflow 2.10.0 would require │ └─ tensorflow-base [2.10.0 eigen_py38h1969d1f_0|2.10.0 gpu_py38h6559e04_0|2.10.0 mkl_py38hb9daa73_0], which requires │ └─ python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported; └─ tensorflow 2.10.0 would require └─ tensorflow-base [2.10.0 eigen_py39h1969d1f_0|2.10.0 gpu_py39h6559e04_0|2.10.0 mkl_py39hb9daa73_0], which requires └─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported. Quitting from lines 145-150 [unnamed-chunk-9] (pareg.Rmd) Error: processing vignette 'pareg.Rmd' failed with diagnostics: one or more Python packages failed to install [error code 1] --- failed re-building ‘pareg.Rmd’ --- re-building ‘pathway_similarities.Rmd’ using rmarkdown --- finished re-building ‘pathway_similarities.Rmd’ SUMMARY: processing the following file failed: ‘pareg.Rmd’ Error: Vignette re-building failed. Execution halted