##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################


* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0

cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=132<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 11 iterations

cluster 2(N=92) has 3 sub-cluster at 3 (5), ICL=102<>30
split 2 into 3 clusters
cluster 1(N=213) has 2 sub-cluster at 2 (6), ICL=42<>30
split 1 into 2 clusters
cluster 1(N=213) has 2 sub-cluster at 2 (6), ICL=0<>30
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0.017 mins, 11 iterations

cluster 4(N=52) has 2 sub-cluster at 2 (5), ICL=40<>34
split 4 into 2 clusters
cluster 5(N=60) has 3 sub-cluster at 3 (19), ICL=16<>34
cluster 3(N=49) has 2 sub-cluster at 2 (6), ICL=12<>34
cluster 2(N=16) has 2 sub-cluster at 2 (100), ICL=4.2<>34
cluster 1(N=431) has 7 sub-cluster at 7 (35), ICL=3.6<>34
cluster 1(N=431) has 7 sub-cluster at 7 (35), ICL=0<>34
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=5->6 N=1210
EM 5 takes 0 mins, 6 iterations

cluster 3(N=117) has 2 sub-cluster at 2 (7), ICL=59<>37
split 3 into 2 clusters
cluster 4(N=102) has 2 sub-cluster at 2 (100), ICL=58<>37
split 4 into 2 clusters
cluster 5(N=152) has 7 sub-cluster at 7 (29), ICL=14<>37
cluster 1(N=827) has 2 sub-cluster at 2 (10), ICL=14<>37
cluster 2(N=23) has 2 sub-cluster at 2 (100), ICL=13<>37
cluster 1(N=827) has 2 sub-cluster at 2 (10), ICL=0<>37
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->7 N=2420
EM 7 takes 0 mins, 7 iterations

cluster 4(N=118) has 4 sub-cluster at 4 (53), ICL=43<>41
split 4 into 4 clusters
cluster 2(N=61) has 3 sub-cluster at 3 (20), ICL=36<>41
cluster 7(N=282) has 2 sub-cluster at 2 (7), ICL=21<>41
cluster 3(N=129) has 7 sub-cluster at 7 (39), ICL=15<>41
cluster 5(N=221) has 7 sub-cluster at 8 (26), ICL=12<>41
cluster 2(N=61) has 3 sub-cluster at 3 (20), ICL=0<>41
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=7->10 N=4841
EM 10 takes 0 mins, 19 iterations

cluster 2(N=110) has 2 sub-cluster at 2 (11), ICL=61<>45
split 2 into 2 clusters
cluster 1(N=3220) has 3 sub-cluster at 3 (7), ICL=34<>45
cluster 3(N=284) has 4 sub-cluster at 4 (18), ICL=30<>45
cluster 10(N=550) has 2 sub-cluster at 2 (8), ICL=27<>45
cluster 5(N=40) has 4 sub-cluster at 5 (37), ICL=19<>45
cluster 4(N=36) has 2 sub-cluster at 2 (13), ICL=17<>45
cluster 6(N=141) has 6 sub-cluster at 7 (13), ICL=11<>45
cluster 8(N=468) has 7 sub-cluster at 7 (30), ICL=7.8<>45
cluster 7(N=11) has 2 sub-cluster at 2 (100), ICL=1.2<>45
cluster 1(N=3220) has 3 sub-cluster at 3 (7), ICL=0<>45
Model Refinement takes 0.18 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=10->11 N=9682
EM 11 takes 0.017 mins, 9 iterations

cluster 1(N=6477) has 3 sub-cluster at 3 (7), ICL=68<>48
split 1 into 3 clusters
cluster 4(N=557) has 2 sub-cluster at 2 (6), ICL=58<>48
split 4 into 2 clusters
cluster 9(N=916) has 3 sub-cluster at 3 (10), ICL=51<>48
split 9 into 3 clusters
cluster 2(N=154) has 4 sub-cluster at 4 (13), ICL=41<>48
cluster 10(N=50) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 11(N=1119) has 2 sub-cluster at 2 (5), ICL=37<>48
cluster 6(N=71) has 4 sub-cluster at 4 (32), ICL=17<>48
cluster 5(N=53) has 2 sub-cluster at 3 (14), ICL=12<>48
cluster 7(N=309) has 8 sub-cluster at 8 (48), ICL=12<>48
cluster 8(N=11) has 2 sub-cluster at 2 (13), ICL=1.2<>48
cluster 1(N=6477) has 3 sub-cluster at 3 (7), ICL=0<>48
Model Refinement takes 0.22 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=11->16 N=9682
EM 16 takes 0.033 mins, 15 iterations

cluster 14(N=60) has 2 sub-cluster at 2 (100), ICL=45<>48
cluster 4(N=154) has 4 sub-cluster at 4 (13), ICL=41<>48
cluster 15(N=51) has 2 sub-cluster at 2 (100), ICL=39<>48
cluster 16(N=1117) has 2 sub-cluster at 2 (5), ICL=37<>48
cluster 6(N=417) has 2 sub-cluster at 2 (7), ICL=26<>48
cluster 7(N=179) has 7 sub-cluster at 8 (33), ICL=18<>48
cluster 9(N=70) has 4 sub-cluster at 4 (36), ICL=18<>48
cluster 8(N=50) has 3 sub-cluster at 4 (10), ICL=16<>48
cluster 5(N=74) has 3 sub-cluster at 5 (20), ICL=13<>48
cluster 10(N=313) has 7 sub-cluster at 8 (29), ICL=5.5<>48
cluster 2(N=307) has 2 sub-cluster at 2 (9), ICL=3.9<>48
cluster 11(N=10) has 2 sub-cluster at 2 (10), ICL=1.2<>48
cluster 2(N=307) has 2 sub-cluster at 2 (9), ICL=0<>48
Model Refinement takes 0.33 mins(max 3: 0.067)
Fit Model 8 of (6/10) K=16->16 N=9682
EM 16 takes 0 mins, 3 iterations

Process completed at8

Major Iteration (Trans) (6/4) takes 1.2 mins
filtered from above:318
filtered from below:0

cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=141<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations

cluster 1(N=82) has 3 sub-cluster at 3 (6), ICL=87<>25
split 1 into 3 clusters
cluster 2(N=223) has 2 sub-cluster at 2 (9), ICL=42<>25
split 2 into 2 clusters
cluster 1(N=82) has 3 sub-cluster at 3 (6), ICL=0<>25
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 22 iterations

cluster 3(N=66) has 2 sub-cluster at 2 (100), ICL=38<>28
split 3 into 2 clusters
cluster 2(N=54) has 3 sub-cluster at 3 (15), ICL=36<>28
split 2 into 3 clusters
cluster 5(N=25) has 2 sub-cluster at 2 (11), ICL=31<>28
split 5 into 2 clusters
cluster 1(N=62) has 5 sub-cluster at 5 (19), ICL=25<>28
cluster 4(N=400) has 7 sub-cluster at 7 (31), ICL=10<>28
cluster 1(N=62) has 5 sub-cluster at 5 (19), ICL=0<>28
Model Refinement takes 0.033 mins(max 2: 0.017)
Fit Model 3 of (6/10) K=5->9 N=1210
EM 8 takes 0 mins, 12 iterations

cluster 4(N=128) has 2 sub-cluster at 2 (26), ICL=26<>31
cluster 2(N=64) has 3 sub-cluster at 3 (24), ICL=22<>31
cluster 1(N=151) has 3 sub-cluster at 3 (37), ICL=18<>31
cluster 7(N=25) has 2 sub-cluster at 2 (6), ICL=17<>31
cluster 3(N=57) has 3 sub-cluster at 3 (15), ICL=15<>31
cluster 8(N=39) has 2 sub-cluster at 2 (12), ICL=9.5<>31
cluster 1(N=151) has 3 sub-cluster at 3 (37), ICL=0<>31
Model Refinement takes 0.067 mins(max 6: 0.033)
Fit Model 4 of (6/10) K=8->8 N=2420
EM 7 takes 0 mins, 8 iterations

cluster 1(N=270) has 2 sub-cluster at 2 (10), ICL=40<>34
split 1 into 2 clusters
cluster 4(N=232) has 2 sub-cluster at 2 (12), ICL=36<>34
split 4 into 2 clusters
cluster 6(N=51) has 3 sub-cluster at 3 (13), ICL=35<>34
split 6 into 3 clusters
cluster 2(N=145) has 5 sub-cluster at 5 (11), ICL=20<>34
cluster 3(N=82) has 2 sub-cluster at 2 (15), ICL=16<>34
cluster 7(N=65) has 3 sub-cluster at 4 (14), ICL=14<>34
cluster 1(N=270) has 2 sub-cluster at 2 (10), ICL=0<>34
Model Refinement takes 0.13 mins(max 5: 0.05)
Fit Model 5 of (6/10) K=7->11 N=4841
EM 11 takes 0 mins, 9 iterations

cluster 3(N=303) has 3 sub-cluster at 3 (6), ICL=39<>37
split 3 into 3 clusters
cluster 9(N=38) has 2 sub-cluster at 2 (100), ICL=33<>37
cluster 4(N=220) has 3 sub-cluster at 3 (14), ICL=29<>37
cluster 2(N=158) has 3 sub-cluster at 3 (32), ICL=16<>37
cluster 5(N=446) has 4 sub-cluster at 4 (9), ICL=12<>37
cluster 11(N=153) has 5 sub-cluster at 6 (29), ICL=8.2<>37
cluster 10(N=39) has 2 sub-cluster at 2 (99), ICL=0.97<>37
cluster 2(N=158) has 3 sub-cluster at 3 (32), ICL=0<>37
Model Refinement takes 0.15 mins(max 7: 0.05)
Fit Model 6 of (6/10) K=11->13 N=9682
EM 13 takes 0.033 mins, 14 iterations

cluster 7(N=902) has 2 sub-cluster at 2 (23), ICL=60<>40
split 7 into 2 clusters
cluster 8(N=50) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 6(N=392) has 2 sub-cluster at 2 (15), ICL=32<>40
cluster 3(N=91) has 5 sub-cluster at 5 (44), ICL=18<>40
cluster 12(N=96) has 4 sub-cluster at 4 (33), ICL=17<>40
cluster 5(N=164) has 6 sub-cluster at 8 (37), ICL=17<>40
cluster 2(N=326) has 2 sub-cluster at 2 (9), ICL=15<>40
cluster 4(N=381) has 7 sub-cluster at 7 (54), ICL=15<>40
cluster 10(N=34) has 3 sub-cluster at 3 (8), ICL=14<>40
cluster 13(N=302) has 7 sub-cluster at 8 (47), ICL=7.4<>40
cluster 11(N=70) has 2 sub-cluster at 2 (9), ICL=3.8<>40
cluster 2(N=326) has 2 sub-cluster at 2 (9), ICL=0<>40
Model Refinement takes 0.27 mins(max 9: 0.067)
Fit Model 7 of (6/10) K=13->14 N=9682
EM 14 takes 0 mins, 3 iterations

cluster 6(N=392) has 2 sub-cluster at 2 (15), ICL=32<>40
cluster 3(N=88) has 4 sub-cluster at 4 (32), ICL=20<>40
cluster 5(N=164) has 6 sub-cluster at 7 (44), ICL=18<>40
cluster 2(N=342) has 3 sub-cluster at 4 (18), ICL=18<>40
cluster 13(N=96) has 4 sub-cluster at 4 (33), ICL=17<>40
cluster 12(N=71) has 4 sub-cluster at 4 (20), ICL=14<>40
cluster 11(N=34) has 3 sub-cluster at 3 (8), ICL=14<>40
cluster 4(N=381) has 6 sub-cluster at 6 (20), ICL=13<>40
cluster 14(N=302) has 5 sub-cluster at 6 (63), ICL=12<>40
cluster 9(N=51) has 2 sub-cluster at 2 (9), ICL=10<>40
cluster 7(N=410) has 2 sub-cluster at 2 (11), ICL=8.8<>40
cluster 8(N=553) has 7 sub-cluster at 8 (53), ICL=1.7<>40
cluster 2(N=342) has 3 sub-cluster at 4 (18), ICL=0<>40
Model Refinement takes 0.28 mins(max 10: 0.067)
Fit Model 8 of (6/10) K=14->14 N=9682
EM 14 takes 0.017 mins, 3 iterations

Process completed at8

Major Iteration (Trans) (6/4) takes 1.1 mins
Fit Model 1 of 10 with 8 clusters
=> results in  8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in  13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in  19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in  21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in  21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.15 ^^M
        
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’

SUMMARY: processing the following file failed:
  ‘immunoClust.Rnw’

Error: Vignette re-building failed.
Execution halted