##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dce
###
##############################################################################
##############################################################################


* checking for file ‘dce/DESCRIPTION’ ... OK
* preparing ‘dce’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘dce.Rmd’ using rmarkdown
2024-11-08 16:46:07.089 R[38932:1574538] XType: Using static font registry.
INFO [2024-11-08 16:46:23] Processing kegg

Quitting from lines 242-243 [unnamed-chunk-16] (dce.Rmd)
Error: processing vignette 'dce.Rmd' failed with diagnostics:
Not all nodes have expression vector in WT data
--- failed re-building ‘dce.Rmd’

--- re-building ‘pathway_databases.Rmd’ using rmarkdown
INFO [2024-11-08 16:46:26] Processing pathbank
INFO [2024-11-08 16:46:33] Processing kegg
--- finished re-building ‘pathway_databases.Rmd’

SUMMARY: processing the following file failed:
  ‘dce.Rmd’

Error: Vignette re-building failed.
Execution halted