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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:RgnTX.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings RgnTX_1.8.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/RgnTX.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RgnTX/DESCRIPTION’ ... OK
* this is package ‘RgnTX’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RgnTX’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
shiftedZScoreTx         52.971  0.208  53.299
permTestTxIA_customPick 30.169  0.228  30.465
permTestTxIA            28.281  0.180  28.572
permTestTx              22.692  0.088  22.830
permTestTx_customPick   21.188  0.131  21.367
permTestTx_customAll    19.450  0.112  19.603
overlapCountsTxIA       11.247  0.083  11.357
overlapWidthTx          10.442  0.152  10.618
distanceTx               8.878  0.235   9.129
randomizeFeaturesTx      8.935  0.032   8.987
getStopCodon             7.917  0.144   8.078
GRangesList2GRanges      6.650  0.323   6.985
randomizeFeaturesTxIA    6.459  0.008   6.482
overlapCountsTx          5.640  0.088   5.741
randomizeTransByOrder    5.247  0.096   5.355
getPermSpaceByFeatures   5.096  0.096   5.203
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK