############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data HiContacts ### ############################################################################## ############################################################################## * checking for file ‘HiContacts/DESCRIPTION’ ... OK * preparing ‘HiContacts’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘HiContacts.Rmd’ using rmarkdown Warning in for (i in seq_len(n)) { : closing unused connection 4 (/home/biocbuild/.cache/R/ExperimentHub/37cbb2193e94e6_7751) Quitting from lines 121-127 [unnamed-chunk-8] (HiContacts.Rmd) Error: processing vignette 'HiContacts.Rmd' failed with diagnostics: error in evaluating the argument 'con' in selecting a method for function 'import': HDF5. File accessibility. Unable to open file. --- failed re-building ‘HiContacts.Rmd’ SUMMARY: processing the following file failed: ‘HiContacts.Rmd’ Error: Vignette re-building failed. Execution halted