############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:yeastGSData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings yeastGSData_0.42.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/yeastGSData.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.5 LTS * using session charset: UTF-8 * checking for file ‘yeastGSData/DESCRIPTION’ ... OK * this is package ‘yeastGSData’ version ‘0.42.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘yeastGSData’ can be installed ... OK * checking installed package size ... NOTE installed size is 17.3Mb sub-directories of 1Mb or more: extdata 16.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... NOTE prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references checkRd: (-1) Mpact.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) Mpact.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) Mpact.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) Mpact.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) Mpact.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) Mpact.Rd:19: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress BayesFactorNGS.rda 46Kb 18Kb xz BayesFactorPGS.rda 70Kb 32Kb xz MIPSGS.rda 15Kb 9Kb xz Mpact.rda 199Kb 136Kb bzip2 NEGGS.rda 600Kb 40Kb xz * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs See ‘/home/biocbuild/bbs-3.19-data-experiment/meat/yeastGSData.Rcheck/00check.log’ for details.