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###
### Running command:
###
###   chmod a+r SurfR -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SurfR
###
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* checking for file 'SurfR/DESCRIPTION' ... OK
* preparing 'SurfR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Intro_to_SurfR.Rmd' using rmarkdown
trying URL 'https://gdc.cancer.gov/system/files/public/file/gdc-client_2.3_Windows_x64-py3.8-windows-2019.zip'
Content type 'application/zip' length 12060441 bytes (11.5 MB)
==================================================
downloaded 11.5 MB


Quitting from lines 382-393 [unnamed-chunk-3] (Intro_to_SurfR.Rmd)
Error: processing vignette 'Intro_to_SurfR.Rmd' failed with diagnostics:
I couldn't find all the files from the query. Please check if the directory parameter is right or `GDCdownload` downloaded the samples.
--- failed re-building 'Intro_to_SurfR.Rmd'

SUMMARY: processing the following file failed:
  'Intro_to_SurfR.Rmd'

Error: Vignette re-building failed.
Execution halted