############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SIAMCAT ### ############################################################################## ############################################################################## * checking for file ‘SIAMCAT/DESCRIPTION’ ... OK * preparing ‘SIAMCAT’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SIAMCAT_confounder.Rmd’ using rmarkdown 2024-10-17 09:17:31.076 R[36882:390258395] XType: Using static font registry. --- finished re-building ‘SIAMCAT_confounder.Rmd’ --- re-building ‘SIAMCAT_holdout.Rmd’ using rmarkdown Quitting from lines 75-87 [siamcat_cn] (SIAMCAT_holdout.Rmd) Error: processing vignette 'SIAMCAT_holdout.Rmd' failed with diagnostics: cannot open the connection to 'https://zenodo.org/api/files/d81e429c-870f-44e0-a44a-2a4aa541b6c1/meta_Yu.tsv' --- failed re-building ‘SIAMCAT_holdout.Rmd’ --- re-building ‘SIAMCAT_meta.Rmd’ using rmarkdown Quitting from lines 49-62 [load_data] (SIAMCAT_meta.Rmd) Error: processing vignette 'SIAMCAT_meta.Rmd' failed with diagnostics: cannot open the connection to 'https://zenodo.org/api/files/d81e429c-870f-44e0-a44a-2a4aa541b6c1/feat_genus_cd.tsv' --- failed re-building ‘SIAMCAT_meta.Rmd’ --- re-building ‘SIAMCAT_ml_pitfalls.Rmd’ using rmarkdown Quitting from lines 341-350 [load_data_ibd] (SIAMCAT_ml_pitfalls.Rmd) Error: processing vignette 'SIAMCAT_ml_pitfalls.Rmd' failed with diagnostics: HTTP error 503. --- failed re-building ‘SIAMCAT_ml_pitfalls.Rmd’ --- re-building ‘SIAMCAT_read-in.Rmd’ using rmarkdown --- finished re-building ‘SIAMCAT_read-in.Rmd’ --- re-building ‘SIAMCAT_vignette.Rmd’ using rmarkdown --- finished re-building ‘SIAMCAT_vignette.Rmd’ SUMMARY: processing the following files failed: ‘SIAMCAT_holdout.Rmd’ ‘SIAMCAT_meta.Rmd’ ‘SIAMCAT_ml_pitfalls.Rmd’ Error: Vignette re-building failed. Execution halted