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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ORFik
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* checking for file ‘ORFik/DESCRIPTION’ ... OK
* preparing ‘ORFik’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Annotation_Alignment.Rmd’ using rmarkdown
--- finished re-building ‘Annotation_Alignment.Rmd’

--- re-building ‘Importing_Data.Rmd’ using rmarkdown

Quitting from lines 152-164 [unnamed-chunk-7] (Importing_Data.Rmd)
Error: processing vignette 'Importing_Data.Rmd' failed with diagnostics:
'list' object cannot be coerced to type 'logical'
--- failed re-building ‘Importing_Data.Rmd’

--- re-building ‘ORFikExperiment.Rmd’ using rmarkdown
2024-10-17 06:01:39.537 R[93014:389718637] XType: Using static font registry.
--- finished re-building ‘ORFikExperiment.Rmd’

--- re-building ‘ORFikOverview.Rmd’ using rmarkdown
--- finished re-building ‘ORFikOverview.Rmd’

--- re-building ‘Ribo-seq_pipeline.Rmd’ using rmarkdown
--- finished re-building ‘Ribo-seq_pipeline.Rmd’

--- re-building ‘Working_with_transcripts.Rmd’ using rmarkdown

Quitting from lines 29-42 [unnamed-chunk-1] (Working_with_transcripts.Rmd)
Error: processing vignette 'Working_with_transcripts.Rmd' failed with diagnostics:
'list' object cannot be coerced to type 'logical'
--- failed re-building ‘Working_with_transcripts.Rmd’

SUMMARY: processing the following files failed:
  ‘Importing_Data.Rmd’ ‘Working_with_transcripts.Rmd’

Error: Vignette re-building failed.
Execution halted