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### Running command:
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###   E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Moonlight2R.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings Moonlight2R_1.2.0.tar.gz
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* using log directory 'E:/biocbuild/bbs-3.19-bioc/meat/Moonlight2R.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'Moonlight2R/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Moonlight2R' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Moonlight2R' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'Moonlight2R-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GLS
> ### Title: GLS This function carries out gene literature search.
> ### Aliases: GLS
> 
> ### ** Examples
> 
> genes_query <- "BRCA1"
> dataGLS <- GLS(genes = genes_query,
+                query_string = "AND cancer AND driver",
+ 	  max_records = 2)
Killing the request! Something is not working. Please, try again later
Error in `map()`:
ℹ In index: 1.
Caused by error in `if (count_pubmed > 0) ...`:
! argument is of length zero
Backtrace:
     ▆
  1. ├─Moonlight2R::GLS(...)
  2. │ ├─map(genes, search_pubmed) %>% bind_rows()
  3. │ └─purrr::map(genes, search_pubmed)
  4. │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
  5. │     ├─purrr:::with_indexed_errors(...)
  6. │     │ └─base::withCallingHandlers(...)
  7. │     ├─purrr:::call_with_cleanup(...)
  8. │     └─Moonlight2R (local) .f(.x[[i]], ...)
  9. ├─dplyr::bind_rows(.)
 10. │ └─rlang::list2(...)
 11. └─base::.handleSimpleError(...)
 12.   └─purrr (local) h(simpleError(msg, call))
 13.     └─cli::cli_abort(...)
 14.       └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
    4. │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
    5. │     ├─purrr:::with_indexed_errors(...)
    6. │     │ └─base::withCallingHandlers(...)
    7. │     ├─purrr:::call_with_cleanup(...)
    8. │     └─Moonlight2R (local) .f(.x[[i]], ...)
    9. ├─dplyr::bind_rows(.)
   10. │ └─rlang::list2(...)
   11. └─base::.handleSimpleError(...)
   12.   └─purrr (local) h(simpleError(msg, call))
   13.     └─cli::cli_abort(...)
   14.       └─rlang::abort(...)
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 39 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  'E:/biocbuild/bbs-3.19-bioc/meat/Moonlight2R.Rcheck/00check.log'
for details.