############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Moonlight2R ### ############################################################################## ############################################################################## * checking for file ‘Moonlight2R/DESCRIPTION’ ... OK * preparing ‘Moonlight2R’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Moonlight2R.Rmd’ using rmarkdown trying URL 'https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/core_K27ac/jointModel/final/E096_18_core_K27ac_hg38lift_mnemonics.bed.gz' Content type 'application/x-gzip' length 3835377 bytes (3.7 MB) ================================================== downloaded 3.7 MB Quitting from lines 761-766 [unnamed-chunk-21] (Moonlight2R.Rmd) Error: processing vignette 'Moonlight2R.Rmd' failed with diagnostics: ℹ In index: 1. Caused by error in `if (count_pubmed > 0) ...`: ! argument is of length zero --- failed re-building ‘Moonlight2R.Rmd’ SUMMARY: processing the following file failed: ‘Moonlight2R.Rmd’ Error: Vignette re-building failed. Execution halted