############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL GOSim ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'GOSim' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.2.0' using C++ compiler: 'G__~1.EXE (GCC) 13.2.0' g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" `E:/biocbuild/bbs-3.19-bioc/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c OAWrapper.cpp -o OAWrapper.o Loading required package: Rcpp In file included from E:/biocbuild/bbs-3.19-bioc/R/include/R.h:73, from hungarian2.h:28, from OAWrapper.cpp:1: E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include/Rcpp/exceptions/cpp11/exceptions.h: In function 'void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]': E:/biocbuild/bbs-3.19-bioc/R/include/R_ext/Error.h:69:17: warning: infinite recursion detected [-Winfinite-recursion] 69 | #define warning Rf_warning | ^~~~~~~~~~ E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include/Rcpp/exceptions/cpp11/exceptions.h:46:13: note: in expansion of macro 'warning' 46 | inline void warning(const char* fmt, Args&&... args ) { | ^~~~~~~ In file included from E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include/Rcpp/exceptions.h:180, from E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include/RcppCommon.h:130, from E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include/Rcpp.h:27, from OAWrapper.cpp:10: E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include/Rcpp/exceptions/cpp11/exceptions.h:47:15: note: recursive call 47 | Rf_warning("%s", tfm::format(fmt, std::forward(args)... ).c_str()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hungarian2.c -o hungarian2.o Loading required package: Rcpp g++ -std=gnu++17 -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR Loading required package: Rcpp installing to E:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-GOSim/00new/GOSim/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in fun(libname, pkgname) : Package 'GOSim' is deprecated and will be removed from Bioconductor version 3.20 ** testing if installed package can be loaded from final location Warning in fun(libname, pkgname) : Package 'GOSim' is deprecated and will be removed from Bioconductor version 3.20 ** testing if installed package keeps a record of temporary installation path * DONE (GOSim)