############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('affyio_1.73.0.tar.gz')" ### ############################################################################## ############################################################################## ─ BiocCheckVersion: 1.39.0 ─ BiocVersion: 3.18 ─ Package: affyio ─ PackageVersion: 1.73.0 ─ sourceDir: /tmp/Rtmpyo9rZc/file38967e5f8742d1/affyio ─ installDir: /tmp/Rtmpyo9rZc/file38967e2c90e74b ─ BiocCheckDir: /home/biocbuild/bbs-3.18-bioc-testing/meat/affyio.BiocCheck ─ platform: unix ─ isTarBall: TRUE * Installing package... * Checking for deprecated package usage... * Checking for remote package usage... * Checking for 'LazyData: true' usage... * Checking version number... * Checking for version number mismatch... * Checking version number validity... * Checking R version dependency... * NOTE: Update R version dependency from 2.6.0 to 4.3.0. * Checking package size... * Checking individual file sizes... * Checking biocViews... * Checking that biocViews are present... * Checking package type based on biocViews... Software * Checking for non-trivial biocViews... * Checking that biocViews come from the same category... * Checking biocViews validity... * Checking for recommended biocViews... * Checking build system compatibility... * Checking for blank lines in DESCRIPTION... * Checking if DESCRIPTION is well formatted... * Checking for proper Description: field... * NOTE: The Description field in the DESCRIPTION is made up by less than 3 sentences. Please consider expanding this field, and structure it as a full paragraph * Checking for whitespace in DESCRIPTION field names... * Checking that Package field matches directory/tarball name... * Checking for Version field... * Checking for valid maintainer... * ERROR: Remove Maintainer field. Use Authors@R [cre] designation. * Checking License: for restrictive use... * NOTE: License 'LGPL (>= 2)' unknown; licenses cannot restrict use * Checking for recommeded fields in DESCRIPTION... * NOTE: Provide 'BugReports' field(s) in DESCRIPTION * Checking for pinned package versions... * Checking DESCRIPTION/NAMESPACE consistency... * Checking .Rbuildignore... * Checking for stray BiocCheck output folders... * Checking vignette directory... * ERROR: No 'vignettes' directory. * Checking package installation calls in R code... * Checking for library/require of affyio... * Checking coding practice... * NOTE: Avoid 'cat' and 'print' outside of 'show' methods * NOTE: Avoid the use of 'paste' in condition signals * Checking parsed R code in R directory, examples, vignettes... * Checking function lengths... * Checking man page documentation... * WARNING: Empty or missing \value sections found in man pages. * ERROR: At least 80% of man pages documenting exported objects must have runnable examples. * Checking package NEWS... * NOTE: Consider adding a NEWS file, so your package news will be included in Bioconductor release announcements. * Checking unit tests... * NOTE: Consider adding unit tests. We strongly encourage them. See https://contributions.bioconductor.org/tests.html * Checking skip_on_bioc() in tests... * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source... * NOTE: Consider shorter lines; 16 lines (5%) are > 80 characters long. * NOTE: Consider multiples of 4 spaces for line indents; 64 lines (20%) are not. See https://contributions.bioconductor.org/r-code.html See styler package: https://cran.r-project.org/package=styler as described in the BiocCheck vignette. * Checking if package already exists in CRAN... * Checking for bioc-devel mailing list subscription... * NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel mailing list (requires admin credentials). Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel * Checking for support site registration... Maintainer is registered at support site. Package name is in support site watched tags. ─ BiocCheck results ── 3 ERRORS | 1 WARNINGS | 11 NOTES See the affyio.BiocCheck folder and run browseVignettes(package = 'BiocCheck') for details.