############################################################################## ############################################################################## ### ### Running command: ### ### /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Biostrings ### ############################################################################## ############################################################################## * checking for file ‘Biostrings/DESCRIPTION’ ... OK * preparing ‘Biostrings’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘matchprobes.Rmd’ using rmarkdown Quitting from lines 200-205 [bap] (matchprobes.Rmd) Error: processing vignette 'matchprobes.Rmd' failed with diagnostics: there is no package called 'affydata' --- failed re-building ‘matchprobes.Rmd’ --- re-building ‘Biostrings2Classes.Rnw’ using Sweave --- finished re-building ‘Biostrings2Classes.Rnw’ --- re-building ‘BiostringsQuickOverview.Rnw’ using Sweave --- finished re-building ‘BiostringsQuickOverview.Rnw’ --- re-building ‘MultipleAlignments.Rnw’ using Sweave --- finished re-building ‘MultipleAlignments.Rnw’ --- re-building ‘PairwiseAlignments.Rnw’ using Sweave --- finished re-building ‘PairwiseAlignments.Rnw’ SUMMARY: processing the following file failed: ‘matchprobes.Rmd’ Error: Vignette re-building failed. Execution halted