############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scp ### ############################################################################## ############################################################################## * checking for file ‘scp/DESCRIPTION’ ... OK * preparing ‘scp’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘QFeatures_nutshell.Rmd’ using rmarkdown 2024-04-17 02:12:13.220 R[91220:450430201] XType: Using static font registry. --- finished re-building ‘QFeatures_nutshell.Rmd’ --- re-building ‘advanced.Rmd’ using rmarkdown --- finished re-building ‘advanced.Rmd’ --- re-building ‘read_scp.Rmd’ using rmarkdown [WARNING] Citeproc: citation Amezquita2019-bf not found --- finished re-building ‘read_scp.Rmd’ --- re-building ‘reporting_missing_values.Rmd’ using rmarkdown --- finished re-building ‘reporting_missing_values.Rmd’ --- re-building ‘scp.Rmd’ using rmarkdown Quitting from lines 943-951 [run_UMAP] (scp.Rmd) Error: processing vignette 'scp.Rmd' failed with diagnostics: function 'as_cholmod_sparse' not provided by package 'Matrix' --- failed re-building ‘scp.Rmd’ SUMMARY: processing the following file failed: ‘scp.Rmd’ Error: Vignette re-building failed. Execution halted