############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scMerge ### ############################################################################## ############################################################################## * checking for file ‘scMerge/DESCRIPTION’ ... OK * preparing ‘scMerge’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘scMerge.Rmd’ using rmarkdown 2024-04-17 02:08:55.682 R[90168:450426485] XType: Using static font registry. --- finished re-building ‘scMerge.Rmd’ --- re-building ‘scMerge2.Rmd’ using rmarkdown Quitting from lines 82-92 [unnamed-chunk-2] (scMerge2.Rmd) Error: processing vignette 'scMerge2.Rmd' failed with diagnostics: BiocParallel errors 1 remote errors, element index: 1 1 unevaluated and other errors first remote error: Error in (function (A, nv = 5, nu = nv, maxit = 1000, work = nv + 7, reorth = TRUE, : function 'as_cholmod_sparse' not provided by package 'Matrix' --- failed re-building ‘scMerge2.Rmd’ SUMMARY: processing the following file failed: ‘scMerge2.Rmd’ Error: Vignette re-building failed. Execution halted