############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scDblFinder ### ############################################################################## ############################################################################## * checking for file ‘scDblFinder/DESCRIPTION’ ... OK * preparing ‘scDblFinder’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘computeDoubletDensity.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection Quitting from lines 39-50 [unnamed-chunk-3] (computeDoubletDensity.Rmd) Error: processing vignette 'computeDoubletDensity.Rmd' failed with diagnostics: function 'as_cholmod_sparse' not provided by package 'Matrix' --- failed re-building ‘computeDoubletDensity.Rmd’ --- re-building ‘findDoubletClusters.Rmd’ using rmarkdown Quitting from lines 39-54 [unnamed-chunk-3] (findDoubletClusters.Rmd) Error: processing vignette 'findDoubletClusters.Rmd' failed with diagnostics: function 'as_cholmod_sparse' not provided by package 'Matrix' --- failed re-building ‘findDoubletClusters.Rmd’ --- re-building ‘introduction.Rmd’ using rmarkdown --- finished re-building ‘introduction.Rmd’ --- re-building ‘recoverDoublets.Rmd’ using rmarkdown --- finished re-building ‘recoverDoublets.Rmd’ --- re-building ‘scATAC.Rmd’ using rmarkdown Quitting from lines 41-46 [unnamed-chunk-2] (scATAC.Rmd) Error: processing vignette 'scATAC.Rmd' failed with diagnostics: function 'as_cholmod_sparse' not provided by package 'Matrix' --- failed re-building ‘scATAC.Rmd’ --- re-building ‘scDblFinder.Rmd’ using rmarkdown Quitting from lines 49-55 [unnamed-chunk-3] (scDblFinder.Rmd) Error: processing vignette 'scDblFinder.Rmd' failed with diagnostics: function 'as_cholmod_sparse' not provided by package 'Matrix' --- failed re-building ‘scDblFinder.Rmd’ SUMMARY: processing the following files failed: ‘computeDoubletDensity.Rmd’ ‘findDoubletClusters.Rmd’ ‘scATAC.Rmd’ ‘scDblFinder.Rmd’ Error: Vignette re-building failed. Execution halted