############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data miloR ### ############################################################################## ############################################################################## * checking for file ‘miloR/DESCRIPTION’ ... OK * preparing ‘miloR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘milo_contrasts.Rmd’ using rmarkdown Quitting from lines 55-61 [unnamed-chunk-3] (milo_contrasts.Rmd) Error: processing vignette 'milo_contrasts.Rmd' failed with diagnostics: function 'as_cholmod_sparse' not provided by package 'Matrix' --- failed re-building ‘milo_contrasts.Rmd’ --- re-building ‘milo_demo.Rmd’ using rmarkdown Quitting from lines 66-71 [unnamed-chunk-3] (milo_demo.Rmd) Error: processing vignette 'milo_demo.Rmd' failed with diagnostics: function 'as_cholmod_sparse' not provided by package 'Matrix' --- failed re-building ‘milo_demo.Rmd’ --- re-building ‘milo_gastrulation.Rmd’ using rmarkdown 2024-04-16 21:51:09.169 R[79459:449871237] XType: Using static font registry. Warning: ggrepel: 7 unlabeled data points (too many overlaps). Consider increasing max.overlaps --- finished re-building ‘milo_gastrulation.Rmd’ SUMMARY: processing the following files failed: ‘milo_contrasts.Rmd’ ‘milo_demo.Rmd’ Error: Vignette re-building failed. Execution halted