############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COTAN ### ############################################################################## ############################################################################## * checking for file ‘COTAN/DESCRIPTION’ ... OK * preparing ‘COTAN’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Guided_tutorial_v2.Rmd’ using rmarkdown trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2861nnn/GSM2861514/suppl//GSM2861514_E175_Only_Cortical_Cells_DGE.txt.gz?tool=geoquery' Content type 'application/x-gzip' length 1509523 bytes (1.4 MB) ================================================== downloaded 1.4 MB 2024-04-16 16:16:02.515 R[76391:449162944] XType: Using static font registry. Quitting from lines 170-177 [unnamed-chunk-15] (Guided_tutorial_v2.Rmd) Error: processing vignette 'Guided_tutorial_v2.Rmd' failed with diagnostics: function 'as_cholmod_sparse' not provided by package 'Matrix' --- failed re-building ‘Guided_tutorial_v2.Rmd’ SUMMARY: processing the following file failed: ‘Guided_tutorial_v2.Rmd’ Error: Vignette re-building failed. Execution halted