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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data seqbias
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* checking for file ‘seqbias/DESCRIPTION’ ... OK
* preparing ‘seqbias’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘seqbias’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
$SEQBIAS_OBJ is [common.o miscmath.o pos_table.o kmer_matrix.o logger.o motif.o seqbias.o sequencing_bias.o twobitseq.o]
$YAML_CPP_OBJ is [aliasmanager.o conversion.o directives.o emitfromevents.o emitter.o emitterstate.o emitterutils.o exp.o iterator.o nodebuilder.o node.o nodeownership.o null.o ostream.o parser.o regex.o scanner.o scanscalar.o scantag.o scantoken.o simplekey.o singledocparser.o stream.o tag.o]
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rhtslib/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/zlibbioc/include' -I/opt/R/x86_64/include   -Wall -Wextra -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c common.c -o common.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rhtslib/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/zlibbioc/include' -I/opt/R/x86_64/include   -Wall -Wextra -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c miscmath.c -o miscmath.o
miscmath.c:21:12: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations]
    return finite(a) && 0.0 <= a && a <= 1.0;
           ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/math.h:752:12: note: 'finite' has been explicitly marked deprecated here
extern int finite(double)
           ^
miscmath.c:47:9: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations]
    if (finite(u)) return x + log1p(-exp(u));
        ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/math.h:752:12: note: 'finite' has been explicitly marked deprecated here
extern int finite(double)
           ^
2 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rhtslib/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/zlibbioc/include' -I/opt/R/x86_64/include   -Wall -Wextra -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c pos_table.c -o pos_table.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/Rhtslib/include' -I'/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/zlibbioc/include' -I/opt/R/x86_64/include   -Wall -Wextra -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c kmer_matrix.cpp -o kmer_matrix.o
In file included from kmer_matrix.cpp:8:
In file included from ./kmer_matrix.hpp:13:
In file included from ./yaml-cpp/yaml.h:9:
./yaml-cpp/parser.h:45:8: error: no template named 'auto_ptr' in namespace 'std'
                std::auto_ptr<Scanner> m_pScanner;
                ~~~~~^
./yaml-cpp/parser.h:46:8: error: no template named 'auto_ptr' in namespace 'std'
                std::auto_ptr<Directives> m_pDirectives;
                ~~~~~^
In file included from kmer_matrix.cpp:8:
In file included from ./kmer_matrix.hpp:13:
In file included from ./yaml-cpp/yaml.h:10:
In file included from ./yaml-cpp/node.h:12:
./yaml-cpp/iterator.h:20:17: error: no template named 'auto_ptr' in namespace 'std'
                Iterator(std::auto_ptr<IterPriv> pData);
                         ~~~~~^
./yaml-cpp/iterator.h:36:8: error: no template named 'auto_ptr' in namespace 'std'
                std::auto_ptr<IterPriv> m_pData;
                ~~~~~^
In file included from kmer_matrix.cpp:8:
In file included from ./kmer_matrix.hpp:13:
In file included from ./yaml-cpp/yaml.h:10:
./yaml-cpp/node.h:43:8: error: no template named 'auto_ptr' in namespace 'std'
                std::auto_ptr<Node> Clone() const;
                ~~~~~^
./yaml-cpp/node.h:115:8: error: no template named 'auto_ptr' in namespace 'std'
                std::auto_ptr<NodeOwnership> m_pOwnership;
                ~~~~~^
In file included from kmer_matrix.cpp:8:
In file included from ./kmer_matrix.hpp:13:
In file included from ./yaml-cpp/yaml.h:13:
./yaml-cpp/emitter.h:98:8: error: no template named 'auto_ptr' in namespace 'std'
                std::auto_ptr <EmitterState> m_pState;
                ~~~~~^
7 errors generated.
make: *** [kmer_matrix.o] Error 1
ERROR: compilation failed for package ‘seqbias’
* removing ‘/private/tmp/RtmpcL8eUn/Rinst181b353ef0e4b/seqbias’
      -----------------------------------
ERROR: package installation failed