############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=gaga.buildbin-libdir gaga_2.48.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'gaga' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 12.3.0' gcc -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cseqdesma.c -o cseqdesma.o gcc -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cstat.c -o cstat.o cstat.c: In function 'free_vector': cstat.c:667:20: warning: the comparison will always evaluate as 'true' for the pointer operand in 'v + (sizetype)((long long unsigned int)nl * 4)' must not be NULL [-Waddress] 667 | if( (v+nl) != NULL ) free((char *) (v+nl)); | ^~ cstat.c: In function 'free_dvector': cstat.c:673:20: warning: the comparison will always evaluate as 'true' for the pointer operand in 'v + (sizetype)((long long unsigned int)nl * 8)' must not be NULL [-Waddress] 673 | if( (v+nl) != NULL ) free((char *) (v+nl)); | ^~ cstat.c: In function 'free_ivector': cstat.c:679:20: warning: the comparison will always evaluate as 'true' for the pointer operand in 'v + (sizetype)((long long unsigned int)nl * 4)' must not be NULL [-Waddress] 679 | if( (v+nl) != NULL ) free((char *) (v+nl)); | ^~ cstat.c: In function 'free_dmatrix': cstat.c:687:47: warning: the comparison will always evaluate as 'true' for the pointer operand in '*(m + (sizetype)((long long unsigned int)i * 8)) + (sizetype)((long long unsigned int)ncl * 8)' must not be NULL [-Waddress] 687 | for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL ) | ^~ cstat.c:689:21: warning: the comparison will always evaluate as 'true' for the pointer operand in 'm + (sizetype)((long long unsigned int)nrl * 8)' must not be NULL [-Waddress] 689 | if( (m+nrl) != NULL ) free((char *) (m+nrl)); | ^~ cstat.c: In function 'free_imatrix': cstat.c:697:47: warning: the comparison will always evaluate as 'true' for the pointer operand in '*(m + (sizetype)((long long unsigned int)i * 8)) + (sizetype)((long long unsigned int)ncl * 4)' must not be NULL [-Waddress] 697 | for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL ) | ^~ cstat.c:699:21: warning: the comparison will always evaluate as 'true' for the pointer operand in 'm + (sizetype)((long long unsigned int)nrl * 8)' must not be NULL [-Waddress] 699 | if( (m+nrl) != NULL ) free((char *) (m+nrl)); | ^~ cstat.c: At top level: cstat.c:22:19: warning: 'css_c_sccs_id' defined but not used [-Wunused-const-variable=] 22 | static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$"; | ^~~~~~~~~~~~~ cstat.c:21:19: warning: 'vector_c_sccs_id' defined but not used [-Wunused-const-variable=] 21 | static const char vector_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~ cstat.c:20:19: warning: 'nrutil_c_sccs_id' defined but not used [-Wunused-const-variable=] 20 | static const char nrutil_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~ cstat.c:19:19: warning: 'mess_c_sccs_id' defined but not used [-Wunused-const-variable=] 19 | static const char mess_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~ cstat.c:18:19: warning: 'interface_c_sccs_id' defined but not used [-Wunused-const-variable=] 18 | static const char interface_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~~~~ cstat.c: In function 'lu_inverse': cstat.c:1282:4: warning: 'lu_solve' accessing 8 bytes in a region of size 0 [-Wstringop-overflow=] 1282 | lu_solve(a,n,indx,col); | ^~~~~~~~~~~~~~~~~~~~~~ cstat.c:1282:4: note: referencing argument 4 of type 'double[0]' cstat.c:1237:6: note: in a call to function 'lu_solve' 1237 | void lu_solve(double **a, int n, int *indx, double b[]) { | ^~~~~~~~ In function 'free_dvector', inlined from 'dirmin' at cstat.c:4556:2: cstat.c:673:30: warning: 'free' called on pointer 'xicom' with nonzero offset 8 [-Wfree-nonheap-object] 673 | if( (v+nl) != NULL ) free((char *) (v+nl)); | ^~~~~~~~~~~~~~~~~~~~~~ cstat.c: In function 'dirmin': cstat.c:4523:15: note: declared here 4523 | double *pcom,*xicom,(*nrfunc)(double []); | ^~~~~ In function 'free_dvector', inlined from 'dirmin' at cstat.c:4557:2: cstat.c:673:30: warning: 'free' called on pointer 'pcom' with nonzero offset 8 [-Wfree-nonheap-object] 673 | if( (v+nl) != NULL ) free((char *) (v+nl)); | ^~~~~~~~~~~~~~~~~~~~~~ cstat.c: In function 'dirmin': cstat.c:4523:9: note: declared here 4523 | double *pcom,*xicom,(*nrfunc)(double []); | ^~~~ cstat.c: In function 'minimize': cstat.c:4490:7: warning: 'dirmin' accessing 8 bytes in a region of size 0 [-Wstringop-overflow=] 4490 | dirmin(th,dirinit,n,fret,f,itmax,eps); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cstat.c:4490:7: note: referencing argument 2 of type 'double[0]' cstat.c:4525:6: note: in a call to function 'dirmin' 4525 | void dirmin(double p[], double xi[], int n, double *fret, double (*func)(double []), int itmax, double dirminEPS) { | ^~~~~~ cstat.c:4505:9: warning: 'dirmin' accessing 8 bytes in a region of size 0 [-Wstringop-overflow=] 4505 | dirmin(th,dirinit,n,fret,f,itmax,eps); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cstat.c:4505:9: note: referencing argument 2 of type 'double[0]' cstat.c:4525:6: note: in a call to function 'dirmin' 4525 | void dirmin(double p[], double xi[], int n, double *fret, double (*func)(double []), int itmax, double dirminEPS) { | ^~~~~~ gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.18-bioc/meat/gaga.buildbin-libdir/00LOCK-gaga/00new/gaga/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'gaga' as gaga_2.48.0.zip * DONE (gaga)