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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL alabaster.base
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* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘alabaster.base’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c check_csv.cpp -o check_csv.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c check_df.cpp -o check_df.o
check_df.cpp: In function ‘std::vector<takane::data_frame::ColumnDetails> configure_columns(Rcpp::CharacterVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::List)’:
check_df.cpp:13:15: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   13 |     if (ncols != column_types.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
check_df.cpp:16:15: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   16 |     if (ncols != string_formats.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
check_df.cpp:19:15: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   19 |     if (ncols != factor_levels.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c check_list.cpp -o check_list.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c load_csv.cpp -o load_csv.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c load_list.cpp -o load_list.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.3.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c write_scalar.cpp -o write_scalar.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o alabaster.base.so RcppExports.o check_csv.o check_df.o check_list.o load_csv.o load_list.o write_scalar.o /home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/lib/libhdf5_cpp.a /home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/lib/libhdf5.a -lcrypto -lcurl -lsz -laec -lz -ldl -lm -lz -L/home/biocbuild/R/R-4.3.1/lib -lR
installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-alabaster.base/00new/alabaster.base/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (alabaster.base)