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### Running command:
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###   /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data VAExprs
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* checking for file ‘VAExprs/DESCRIPTION’ ... OK
* preparing ‘VAExprs’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘VAExprs.Rmd’ using rmarkdown
WARNING:tensorflow:OMP_NUM_THREADS is no longer used by the default Keras config. To configure the number of threads, use tf.config.threading APIs.
2023-11-02 07:21:27.583374: W tensorflow/c/c_api.cc:300] Operation '{name:'dense_2/bias/Assign' id:130 op device:{requested: '', assigned: ''} def:{{{node dense_2/bias/Assign}} = AssignVariableOp[_has_manual_control_dependencies=true, dtype=DT_FLOAT, validate_shape=false](dense_2/bias, dense_2/bias/Initializer/zeros)}}' was changed by setting attribute after it was run by a session. This mutation will have no effect, and will trigger an error in the future. Either don't modify nodes after running them or create a new session.
/usr/local/lib/python3.9/site-packages/keras/engine/training_v1.py:2335: UserWarning: `Model.state_updates` will be removed in a future version. This property should not be used in TensorFlow 2.0, as `updates` are applied automatically.
  updates = self.state_updates
2023-11-02 07:21:27.978395: W tensorflow/c/c_api.cc:300] Operation '{name:'loss/mul' id:206 op device:{requested: '', assigned: ''} def:{{{node loss/mul}} = Mul[T=DT_FLOAT, _has_manual_control_dependencies=true](loss/mul/x, loss/dense_2_loss/value)}}' was changed by setting attribute after it was run by a session. This mutation will have no effect, and will trigger an error in the future. Either don't modify nodes after running them or create a new session.